Murphy RF - Search Results

1

Basal body organization and cell geometry during the cell cycle in Tetrahymena thermophila.

Sun H, Soh AWJ, Mitchell LE, Pearson CG, Murphy RF. Sun H, et al. Among authors: murphy rf. Mol Biol Cell. 2023 May 15;34(6):ar53. doi: 10.1091/mbc.E22-11-0508. Epub 2023 Jan 11. Mol Biol Cell. 2023. PMID: 36630324 Free PMC article.

2

Image-derived models of cell organization changes during differentiation and drug treatments.

Ruan X, Johnson GR, Bierschenk I, Nitschke R, Boerries M, Busch H, Murphy RF. Ruan X, et al. Among authors: murphy rf. Mol Biol Cell. 2020 Mar 19;31(7):655-666. doi: 10.1091/mbc.E19-02-0080. Epub 2019 Nov 27. Mol Biol Cell. 2020. PMID: 31774723 Free PMC article.

3

Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery.

Sun H, Murphy RF. Sun H, et al. Among authors: murphy rf. Bioinformatics. 2021 Oct 25;37(20):3538-3545. doi: 10.1093/bioinformatics/btab322. Bioinformatics. 2021. PMID: 33983377 Free PMC article.

4

Improving and evaluating deep learning models of cellular organization.

Sun H, Fu X, Abraham S, Jin S, Murphy RF. Sun H, et al. Among authors: murphy rf. Bioinformatics. 2022 Nov 30;38(23):5299-5306. doi: 10.1093/bioinformatics/btac688. Bioinformatics. 2022. PMID: 36264139 Free PMC article.

5

Expanding the coverage of spatial proteomics: a machine learning approach.

Sun H, Li J, Murphy RF. Sun H, et al. Among authors: murphy rf. Bioinformatics. 2024 Feb 1;40(2):btae062. doi: 10.1093/bioinformatics/btae062. Bioinformatics. 2024. PMID: 38310340 Free PMC article.

6

Learning Morphological, Spatial, and Dynamic Models of Cellular Components.

Sun H, Murphy RF. Sun H, et al. Among authors: murphy rf. Methods Mol Biol. 2024;2800:231-244. doi: 10.1007/978-1-0716-3834-7_16. Methods Mol Biol. 2024. PMID: 38709488

7

Flexible and robust cell type annotation for highly multiplexed tissue images.

Sun H, Yu S, Casals AM, Bäckström A, Lu Y, Lindskog C, Ruffalo M, Lundberg E, Murphy RF. Sun H, et al. Among authors: murphy rf. bioRxiv [Preprint]. 2024 Dec 17:2024.09.12.612510. doi: 10.1101/2024.09.12.612510. bioRxiv. 2024. PMID: 39345395 Free PMC article. Preprint.

8

CellOrganizer: Image-derived models of subcellular organization and protein distribution.

Murphy RF. Murphy RF. Methods Cell Biol. 2012;110:179-93. doi: 10.1016/B978-0-12-388403-9.00007-2. Methods Cell Biol. 2012. PMID: 22482949 Free PMC article.

9

Joint modeling of cell and nuclear shape variation.

Johnson GR, Buck TE, Sullivan DP, Rohde GK, Murphy RF. Johnson GR, et al. Among authors: murphy rf. Mol Biol Cell. 2015 Nov 5;26(22):4046-56. doi: 10.1091/mbc.E15-06-0370. Epub 2015 Sep 9. Mol Biol Cell. 2015. PMID: 26354424 Free PMC article.

10

CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations.

Majarian TD, Cao-Berg I, Ruan X, Murphy RF. Majarian TD, et al. Among authors: murphy rf. Methods Mol Biol. 2019;1945:251-264. doi: 10.1007/978-1-4939-9102-0_11. Methods Mol Biol. 2019. PMID: 30945250 Free PMC article.

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