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Page 1
Ovarian cancer mutational processes drive site-specific immune evasion.
Vázquez-García I, Uhlitz F, Ceglia N, Lim JLP, Wu M, Mohibullah N, Niyazov J, Ruiz AEB, Boehm KM, Bojilova V, Fong CJ, Funnell T, Grewal D, Havasov E, Leung S, Pasha A, Patel DM, Pourmaleki M, Rusk N, Shi H, Vanguri R, Williams MJ, Zhang AW, Broach V, Chi DS, Da Cruz Paula A, Gardner GJ, Kim SH, Lennon M, Long Roche K, Sonoda Y, Zivanovic O, Kundra R, Viale A, Derakhshan FN, Geneslaw L, Issa Bhaloo S, Maroldi A, Nunez R, Pareja F, Stylianou A, Vahdatinia M, Bykov Y, Grisham RN, Liu YL, Lakhman Y, Nikolovski I, Kelly D, Gao J, Schietinger A, Hollmann TJ, Bakhoum SF, Soslow RA, Ellenson LH, Abu-Rustum NR, Aghajanian C, Friedman CF, McPherson A, Weigelt B, Zamarin D, Shah SP. Vázquez-García I, et al. Among authors: geneslaw l. Nature. 2022 Dec;612(7941):778-786. doi: 10.1038/s41586-022-05496-1. Epub 2022 Dec 14. Nature. 2022. PMID: 36517593 Free PMC article.
Semisupervised Training of a Brain MRI Tumor Detection Model Using Mined Annotations.
Swinburne NC, Yadav V, Kim J, Choi YR, Gutman DC, Yang JT, Moss N, Stone J, Tisnado J, Hatzoglou V, Haque SS, Karimi S, Lyo J, Juluru K, Pichotta K, Gao J, Shah SP, Holodny AI, Young RJ; MSK MIND Consortium. Swinburne NC, et al. Radiology. 2022 Apr;303(1):80-89. doi: 10.1148/radiol.210817. Epub 2022 Jan 18. Radiology. 2022. PMID: 35040676 Free PMC article.
Multimodal integration of radiology, pathology and genomics for prediction of response to PD-(L)1 blockade in patients with non-small cell lung cancer.
Vanguri RS, Luo J, Aukerman AT, Egger JV, Fong CJ, Horvat N, Pagano A, Araujo-Filho JAB, Geneslaw L, Rizvi H, Sosa R, Boehm KM, Yang SR, Bodd FM, Ventura K, Hollmann TJ, Ginsberg MS, Gao J; MSK MIND Consortium; Hellmann MD, Sauter JL, Shah SP. Vanguri RS, et al. Among authors: geneslaw l. Nat Cancer. 2022 Oct;3(10):1151-1164. doi: 10.1038/s43018-022-00416-8. Epub 2022 Aug 29. Nat Cancer. 2022. PMID: 36038778 Free PMC article.
Fast, light, and scalable: harnessing data-mined line annotations for automated tumor segmentation on brain MRI.
Swinburne NC, Yadav V, Murthy KNK, Elnajjar P, Shih HH, Panyam PK, Santilli A, Gutman DC, Pike L, Moss NS, Stone J, Hatzoglou V, Shah A, Juluru K, Shah SP, Holodny AI, Young RJ; M.S.K. MIND Consortium. Swinburne NC, et al. Eur Radiol. 2023 Sep;33(9):6582-6591. doi: 10.1007/s00330-023-09583-3. Epub 2023 Apr 12. Eur Radiol. 2023. PMID: 37042979 Free PMC article.
Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center.
Schüffler PJ, Geneslaw L, Yarlagadda DVK, Hanna MG, Samboy J, Stamelos E, Vanderbilt C, Philip J, Jean MH, Corsale L, Manzo A, Paramasivam NHG, Ziegler JS, Gao J, Perin JC, Kim YS, Bhanot UK, Roehrl MHA, Ardon O, Chiang S, Giri DD, Sigel CS, Tan LK, Murray M, Virgo C, England C, Yagi Y, Sirintrapun SJ, Klimstra D, Hameed M, Reuter VE, Fuchs TJ. Schüffler PJ, et al. Among authors: geneslaw l. J Am Med Inform Assoc. 2021 Aug 13;28(9):1874-1884. doi: 10.1093/jamia/ocab085. J Am Med Inform Assoc. 2021. PMID: 34260720 Free PMC article.
Digital pathology operations at a tertiary cancer center: Infrastructure requirements and operational cost.
Ardon O, Klein E, Manzo A, Corsale L, England C, Mazzella A, Geneslaw L, Philip J, Ntiamoah P, Wright J, Sirintrapun SJ, Lin O, Elenitoba-Johnson K, Reuter VE, Hameed MR, Hanna MG. Ardon O, et al. Among authors: geneslaw l. J Pathol Inform. 2023 May 16;14:100318. doi: 10.1016/j.jpi.2023.100318. eCollection 2023. J Pathol Inform. 2023. PMID: 37811334 Free PMC article.
Report of the Medical Image De-Identification (MIDI) Task Group - Best Practices and Recommendations.
Clunie DA, Flanders A, Taylor A, Erickson B, Bialecki B, Brundage D, Gutman D, Prior F, Seibert JA, Perry J, Gichoya JW, Kirby J, Andriole K, Geneslaw L, Moore S, Fitzgerald TJ, Tellis W, Xiao Y, Farahani K, Luo J, Rosenthal A, Kandarpa K, Rosen R, Goetz K, Babcock D, Xu B, Hsiao J. Clunie DA, et al. Among authors: geneslaw l. ArXiv [Preprint]. 2023 Apr 1:arXiv:2303.10473v2. ArXiv. 2023. PMID: 37033463 Free PMC article. Preprint. No abstract available.