Zhou J - Search Results

1

End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman.

Petti S, Bhattacharya N, Rao R, Dauparas J, Thomas N, Zhou J, Rush AM, Koo P, Ovchinnikov S. Petti S, et al. Among authors: zhou j. Bioinformatics. 2023 Jan 1;39(1):btac724. doi: 10.1093/bioinformatics/btac724. Bioinformatics. 2023. PMID: 36355460 Free PMC article.

2

Higher-order epistasis and phenotypic prediction.

Zhou J, Wong MS, Chen WC, Krainer AR, Kinney JB, McCandlish DM. Zhou J, et al. Proc Natl Acad Sci U S A. 2022 Sep 27;119(39):e2204233119. doi: 10.1073/pnas.2204233119. Epub 2022 Sep 21. Proc Natl Acad Sci U S A. 2022. PMID: 36129941 Free PMC article.

3

Density estimation for ordinal biological sequences and its applications.

Chen WC, Zhou J, McCandlish DM. Chen WC, et al. Among authors: zhou j. Phys Rev E. 2024 Oct;110(4-1):044408. doi: 10.1103/PhysRevE.110.044408. Phys Rev E. 2024. PMID: 39562961

4

Field-theoretic density estimation for biological sequence space with applications to 5' splice site diversity and aneuploidy in cancer.

Chen WC, Zhou J, Sheltzer JM, Kinney JB, McCandlish DM. Chen WC, et al. Among authors: zhou j. Proc Natl Acad Sci U S A. 2021 Oct 5;118(40):e2025782118. doi: 10.1073/pnas.2025782118. Proc Natl Acad Sci U S A. 2021. PMID: 34599093 Free PMC article.

5

Minimum epistasis interpolation for sequence-function relationships.

Zhou J, McCandlish DM. Zhou J, et al. Nat Commun. 2020 Apr 14;11(1):1782. doi: 10.1038/s41467-020-15512-5. Nat Commun. 2020. PMID: 32286265 Free PMC article.

6

Selection for Protein Stability Enriches for Epistatic Interactions.

Posfai A, Zhou J, Plotkin JB, Kinney JB, McCandlish DM. Posfai A, et al. Among authors: zhou j. Genes (Basel). 2018 Aug 21;9(9):423. doi: 10.3390/genes9090423. Genes (Basel). 2018. PMID: 30134605 Free PMC article.

7

Characterization of the mating system of a native perennial tetraploid herb, Silene stellata.

Zhou J, Zimmer EA, Fenster CB, Dudash MR. Zhou J, et al. Am J Bot. 2018 Oct;105(10):1643-1652. doi: 10.1002/ajb2.1158. Epub 2018 Oct 1. Am J Bot. 2018. PMID: 30276803 Free article.

8

Comparison of population genetic structures of the plant Silene stellata and its obligate pollinating seed predator moth Hadena ectypa.

Zhou J, Dudash MR, Zimmer EA, Fenster CB. Zhou J, et al. Ann Bot. 2018 Sep 24;122(4):593-603. doi: 10.1093/aob/mcy091. Ann Bot. 2018. PMID: 29850821 Free PMC article.

9

Variable and sexually conflicting selection on Silene stellata floral traits by a putative moth pollinator selective agent.

Zhou J, Reynolds RJ, Zimmer EA, Dudash MR, Fenster CB. Zhou J, et al. Evolution. 2020 Jul;74(7):1321-1334. doi: 10.1111/evo.13965. Epub 2020 Jun 11. Evolution. 2020. PMID: 32202323

10

Strangers in a foreign land: 'Yeastizing' plant enzymes.

Van Gelder K, Lindner SN, Hanson AD, Zhou J. Van Gelder K, et al. Among authors: zhou j. Microb Biotechnol. 2024 Sep;17(9):e14525. doi: 10.1111/1751-7915.14525. Microb Biotechnol. 2024. PMID: 39222378 Free PMC article. Review.

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