Xu S - Search Results

1

Exploring Epigenomic Datasets by ChIPseeker.

Wang Q, Li M, Wu T, Zhan L, Li L, Chen M, Xie W, Xie Z, Hu E, Xu S, Yu G. Wang Q, et al. Among authors: xu s. Curr Protoc. 2022 Oct;2(10):e585. doi: 10.1002/cpz1.585. Curr Protoc. 2022. PMID: 36286622

2

Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.

Wang LG, Lam TT, Xu S, Dai Z, Zhou L, Feng T, Guo P, Dunn CW, Jones BR, Bradley T, Zhu H, Guan Y, Jiang Y, Yu G. Wang LG, et al. Among authors: xu s. Mol Biol Evol. 2020 Feb 1;37(2):599-603. doi: 10.1093/molbev/msz240. Mol Biol Evol. 2020. PMID: 31633786 Free PMC article.

3

Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis.

He J, Xu S, Zhang B, Xiao C, Chen Z, Si F, Fu J, Lin X, Zheng G, Yu G, Chen J. He J, et al. Among authors: xu s. Aging (Albany NY). 2020 May 11;12(9):8583-8604. doi: 10.18632/aging.103168. Epub 2020 May 11. Aging (Albany NY). 2020. PMID: 32392181 Free PMC article.

4

ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data.

Xu S, Dai Z, Guo P, Fu X, Liu S, Zhou L, Tang W, Feng T, Chen M, Zhan L, Wu T, Hu E, Jiang Y, Bo X, Yu G. Xu S, et al. Mol Biol Evol. 2021 Aug 23;38(9):4039-4042. doi: 10.1093/molbev/msab166. Mol Biol Evol. 2021. PMID: 34097064 Free PMC article.

5

clusterProfiler 4.0: A universal enrichment tool for interpreting omics data.

Wu T, Hu E, Xu S, Chen M, Guo P, Dai Z, Feng T, Zhou L, Tang W, Zhan L, Fu X, Liu S, Bo X, Yu G. Wu T, et al. Among authors: xu s. Innovation (Camb). 2021 Jul 1;2(3):100141. doi: 10.1016/j.xinn.2021.100141. eCollection 2021 Aug 28. Innovation (Camb). 2021. PMID: 34557778 Free PMC article.

6

Use ggbreak to Effectively Utilize Plotting Space to Deal With Large Datasets and Outliers.

Xu S, Chen M, Feng T, Zhan L, Zhou L, Yu G. Xu S, et al. Front Genet. 2021 Nov 2;12:774846. doi: 10.3389/fgene.2021.774846. eCollection 2021. Front Genet. 2021. PMID: 34795698 Free PMC article.

7

ggmsa: a visual exploration tool for multiple sequence alignment and associated data.

Zhou L, Feng T, Xu S, Gao F, Lam TT, Wang Q, Wu T, Huang H, Zhan L, Li L, Guan Y, Dai Z, Yu G. Zhou L, et al. Among authors: xu s. Brief Bioinform. 2022 Jul 18;23(4):bbac222. doi: 10.1093/bib/bbac222. Brief Bioinform. 2022. PMID: 35671504

8

Characterization of toxin-antitoxin systems from public sequencing data: A case study in Pseudomonas aeruginosa.

Dai Z, Wu T, Xu S, Zhou L, Tang W, Hu E, Zhan L, Chen M, Yu G. Dai Z, et al. Among authors: xu s. Front Microbiol. 2022 Aug 16;13:951774. doi: 10.3389/fmicb.2022.951774. eCollection 2022. Front Microbiol. 2022. PMID: 36051757 Free PMC article.

9

MicrobiotaProcess: A comprehensive R package for deep mining microbiome.

Xu S, Zhan L, Tang W, Wang Q, Dai Z, Zhou L, Feng T, Chen M, Wu T, Hu E, Yu G. Xu S, et al. Innovation (Camb). 2023 Feb 2;4(2):100388. doi: 10.1016/j.xinn.2023.100388. eCollection 2023 Mar 13. Innovation (Camb). 2023. PMID: 36895758 Free PMC article.

10

MMINP: A computational framework of microbe-metabolite interactions-based metabolic profiles predictor based on the O2-PLS algorithm.

Tang W, Zheng H, Xu S, Li P, Zhan L, Luo X, Dai Z, Wang Q, Yu G. Tang W, et al. Among authors: xu s. Gut Microbes. 2023 Jan-Dec;15(1):2223349. doi: 10.1080/19490976.2023.2223349. Gut Microbes. 2023. PMID: 37306408 Free PMC article.

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