Ciuffa R - Search Results

1

Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.

Ciuffa R, Uliana F, Mannion J, Mehnert M, Tenev T, Marulli C, Satanowski A, Keller LML, Rodilla Ramírez PN, Ori A, Gstaiger M, Meier P, Aebersold R. Ciuffa R, et al. Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2117175119. doi: 10.1073/pnas.2117175119. Epub 2022 Sep 30. Proc Natl Acad Sci U S A. 2022. PMID: 36179048 Free PMC article.

2

Contribution of Mass Spectrometry-Based Proteomics to the Understanding of TNF-α Signaling.

Ciuffa R, Caron E, Leitner A, Uliana F, Gstaiger M, Aebersold R. Ciuffa R, et al. J Proteome Res. 2017 Jan 6;16(1):14-33. doi: 10.1021/acs.jproteome.6b00728. Epub 2016 Oct 20. J Proteome Res. 2017. PMID: 27762135 Review.

3

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model.

Sajic T, Ciuffa R, Lemos V, Xu P, Leone V, Li C, Williams EG, Makris G, Banaei-Esfahani A, Heikenwalder M, Schoonjans K, Aebersold R. Sajic T, et al. Among authors: ciuffa r. Sci Rep. 2019 May 6;9(1):6913. doi: 10.1038/s41598-019-43091-z. Sci Rep. 2019. PMID: 31061415 Free PMC article.

4

Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes.

Mehnert M, Ciuffa R, Frommelt F, Uliana F, van Drogen A, Ruminski K, Gstaiger M, Aebersold R. Mehnert M, et al. Among authors: ciuffa r. Nat Commun. 2020 Jul 16;11(1):3563. doi: 10.1038/s41467-020-17387-y. Nat Commun. 2020. PMID: 32678104 Free PMC article.

5

Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases.

Buljan M, Ciuffa R, van Drogen A, Vichalkovski A, Mehnert M, Rosenberger G, Lee S, Varjosalo M, Pernas LE, Spegg V, Snijder B, Aebersold R, Gstaiger M. Buljan M, et al. Among authors: ciuffa r. Mol Cell. 2020 Aug 6;79(3):504-520.e9. doi: 10.1016/j.molcel.2020.07.001. Epub 2020 Jul 23. Mol Cell. 2020. PMID: 32707033 Free PMC article.

6

Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen.

Uliana F, Vizovišek M, Acquasaliente L, Ciuffa R, Fossati A, Frommelt F, Goetze S, Wollscheid B, Gstaiger M, De Filippis V, Auf dem Keller U, Aebersold R. Uliana F, et al. Among authors: ciuffa r. Nat Commun. 2021 Mar 16;12(1):1693. doi: 10.1038/s41467-021-21754-8. Nat Commun. 2021. PMID: 33727531 Free PMC article.

7

PCfun: a hybrid computational framework for systematic characterization of protein complex function.

Sharma VS, Fossati A, Ciuffa R, Buljan M, Williams EG, Chen Z, Shao W, Pedrioli PGA, Purcell AW, Martínez MR, Song J, Manica M, Aebersold R, Li C. Sharma VS, et al. Among authors: ciuffa r. Brief Bioinform. 2022 Jul 18;23(4):bbac239. doi: 10.1093/bib/bbac239. Brief Bioinform. 2022. PMID: 35724564 Free PMC article.

8

Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.

Uliana F, Ciuffa R, Mishra R, Fossati A, Frommelt F, Keller S, Mehnert M, Birkeland ES, van Drogen F, Srejic N, Peter M, Tapon N, Aebersold R, Gstaiger M. Uliana F, et al. Among authors: ciuffa r. Mol Syst Biol. 2023 Apr 12;19(4):e11024. doi: 10.15252/msb.202211024. Epub 2023 Mar 10. Mol Syst Biol. 2023. PMID: 36896621 Free PMC article.

9

Molecular basis for coupling the plasma membrane to the actin cytoskeleton during clathrin-mediated endocytosis.

Skruzny M, Brach T, Ciuffa R, Rybina S, Wachsmuth M, Kaksonen M. Skruzny M, et al. Among authors: ciuffa r. Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):E2533-42. doi: 10.1073/pnas.1207011109. Epub 2012 Aug 27. Proc Natl Acad Sci U S A. 2012. PMID: 22927393 Free PMC article.

10

The selective autophagy receptor p62 forms a flexible filamentous helical scaffold.

Ciuffa R, Lamark T, Tarafder AK, Guesdon A, Rybina S, Hagen WJ, Johansen T, Sachse C. Ciuffa R, et al. Cell Rep. 2015 May 5;11(5):748-58. doi: 10.1016/j.celrep.2015.03.062. Epub 2015 Apr 23. Cell Rep. 2015. PMID: 25921531 Free article.

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