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RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine.
Wood EC, Glen AK, Kvarfordt LG, Womack F, Acevedo L, Yoon TS, Ma C, Flores V, Sinha M, Chodpathumwan Y, Termehchy A, Roach JC, Mendoza L, Hoffman AS, Deutsch EW, Koslicki D, Ramsey SA. Wood EC, et al. Among authors: hoffman as. BMC Bioinformatics. 2022 Sep 29;23(1):400. doi: 10.1186/s12859-022-04932-3. BMC Bioinformatics. 2022. PMID: 36175836 Free PMC article.
Progress toward a universal biomedical data translator.
Fecho K, Thessen AE, Baranzini SE, Bizon C, Hadlock JJ, Huang S, Roper RT, Southall N, Ta C, Watkins PB, Williams MD, Xu H, Byrd W, Dančík V, Duby MP, Dumontier M, Glusman G, Harris NL, Hinderer EW, Hyde G, Johs A, Su AI, Qin G, Zhu Q; Biomedical Data Translator Consortium. Fecho K, et al. Clin Transl Sci. 2022 Aug;15(8):1838-1847. doi: 10.1111/cts.13301. Epub 2022 Jun 6. Clin Transl Sci. 2022. PMID: 35611543 Free PMC article. Review.
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, Qin G, Ramsey SA, Shefchek KA, Solbrig H, Soman K, Thessen AE, Haendel MA, Bizon C, Mungall CJ; Biomedical Data Translator Consortium. Unni DR, et al. Clin Transl Sci. 2022 Aug;15(8):1848-1855. doi: 10.1111/cts.13302. Epub 2022 Jun 6. Clin Transl Sci. 2022. PMID: 36125173 Free PMC article. Review.
ARAX: a graph-based modular reasoning tool for translational biomedicine.
Glen AK, Ma C, Mendoza L, Womack F, Wood EC, Sinha M, Acevedo L, Kvarfordt LG, Peene RC, Liu S, Hoffman AS, Roach JC, Deutsch EW, Ramsey SA, Koslicki D. Glen AK, et al. Among authors: hoffman as. Bioinformatics. 2023 Mar 1;39(3):btad082. doi: 10.1093/bioinformatics/btad082. Bioinformatics. 2023. PMID: 36752514 Free PMC article.
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW. Glusman G, et al. Among authors: hoffman as. Genome Med. 2017 Dec 18;9(1):113. doi: 10.1186/s13073-017-0509-y. Genome Med. 2017. PMID: 29254494 Free PMC article. Review.
The logic of domains.
Ribes D, Hoffman AS, Slota SC, Bowker GC. Ribes D, et al. Among authors: hoffman as. Soc Stud Sci. 2019 Jun;49(3):281-309. doi: 10.1177/0306312719849709. Epub 2019 May 23. Soc Stud Sci. 2019. PMID: 31122173 Free PMC article.
Advanced EXAFS analysis techniques applied to the L-edges of the lanthanide oxides.
Smerigan A, Hoffman AS, Ostervold L, Hong J, Perez-Aguillar J, Caine AC, Greenlee L, Bare SR. Smerigan A, et al. Among authors: hoffman as. J Appl Crystallogr. 2024 Nov 22;57(Pt 6):1913-1923. doi: 10.1107/S1600576724010240. eCollection 2024 Dec 1. J Appl Crystallogr. 2024. PMID: 39628878 Free PMC article.
Steam-Assisted Selective CO2 Hydrogenation to Ethanol over Ru-In Catalysts.
Zhou C, Aitbekova A, Liccardo G, Oh J, Stone ML, McShane EJ, Werghi B, Nathan S, Song C, Ciston J, Bustillo KC, Hoffman AS, Hong J, Perez-Aguilar J, Bare SR, Cargnello M. Zhou C, et al. Among authors: hoffman as. Angew Chem Int Ed Engl. 2024 Oct 7;63(41):e202406761. doi: 10.1002/anie.202406761. Epub 2024 Sep 5. Angew Chem Int Ed Engl. 2024. PMID: 38990707
292 results