de Vries AH - Search Results

1

Modelling structural properties of cyanine dye nanotubes at coarse-grained level.

Patmanidis I, Souza PCT, Sami S, Havenith RWA, de Vries AH, Marrink SJ. Patmanidis I, et al. Among authors: de vries ah. Nanoscale Adv. 2022 Jun 20;4(14):3033-3042. doi: 10.1039/d2na00158f. eCollection 2022 Jul 15. Nanoscale Adv. 2022. PMID: 36133510 Free PMC article.

2

Molecular dynamics simulation of the spontaneous formation of a small DPPC vesicle in water in atomistic detail.

de Vries AH, Mark AE, Marrink SJ. de Vries AH, et al. J Am Chem Soc. 2004 Apr 14;126(14):4488-9. doi: 10.1021/ja0398417. J Am Chem Soc. 2004. PMID: 15070345 Free article.

3

Molecular structure of the lecithin ripple phase.

de Vries AH, Yefimov S, Mark AE, Marrink SJ. de Vries AH, et al. Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5392-6. doi: 10.1073/pnas.0408249102. Epub 2005 Apr 4. Proc Natl Acad Sci U S A. 2005. PMID: 15809443 Free PMC article.

4

Does isoprene protect plant membranes from thermal shock? A molecular dynamics study.

Siwko ME, Marrink SJ, de Vries AH, Kozubek A, Schoot Uiterkamp AJ, Mark AE. Siwko ME, et al. Among authors: de vries ah. Biochim Biophys Acta. 2007 Feb;1768(2):198-206. doi: 10.1016/j.bbamem.2006.09.023. Epub 2006 Oct 4. Biochim Biophys Acta. 2007. PMID: 17125733 Free article.

5

Comparison of thermodynamic properties of coarse-grained and atomic-level simulation models.

Baron R, Trzesniak D, de Vries AH, Elsener A, Marrink SJ, van Gunsteren WF. Baron R, et al. Among authors: de vries ah. Chemphyschem. 2007 Feb 19;8(3):452-61. doi: 10.1002/cphc.200600658. Chemphyschem. 2007. PMID: 17290360 Free article.

6

The MARTINI force field: coarse grained model for biomolecular simulations.

Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH. Marrink SJ, et al. Among authors: de vries ah. J Phys Chem B. 2007 Jul 12;111(27):7812-24. doi: 10.1021/jp071097f. Epub 2007 Jun 15. J Phys Chem B. 2007. PMID: 17569554 Free article.

7

Cholesterol shows preference for the interior of polyunsaturated lipid membranes.

Marrink SJ, de Vries AH, Harroun TA, Katsaras J, Wassall SR. Marrink SJ, et al. Among authors: de vries ah. J Am Chem Soc. 2008 Jan 9;130(1):10-1. doi: 10.1021/ja076641c. Epub 2007 Dec 13. J Am Chem Soc. 2008. PMID: 18076174

8

Lipids on the move: simulations of membrane pores, domains, stalks and curves.

Marrink SJ, de Vries AH, Tieleman DP. Marrink SJ, et al. Among authors: de vries ah. Biochim Biophys Acta. 2009 Jan;1788(1):149-68. doi: 10.1016/j.bbamem.2008.10.006. Epub 2008 Oct 25. Biochim Biophys Acta. 2009. PMID: 19013128 Free article. Review.

9

Disturb or stabilize? A molecular dynamics study of the effects of resorcinolic lipids on phospholipid bilayers.

Siwko ME, de Vries AH, Mark AE, Kozubek A, Marrink SJ. Siwko ME, et al. Among authors: de vries ah. Biophys J. 2009 Apr 22;96(8):3140-53. doi: 10.1016/j.bpj.2009.01.040. Biophys J. 2009. PMID: 19383459 Free PMC article.

10

Reconstruction of atomistic details from coarse-grained structures.

Rzepiela AJ, Schäfer LV, Goga N, Risselada HJ, De Vries AH, Marrink SJ. Rzepiela AJ, et al. Among authors: de vries ah. J Comput Chem. 2010 Apr 30;31(6):1333-43. doi: 10.1002/jcc.21415. J Comput Chem. 2010. PMID: 20087907

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