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A computational approach to rapidly design peptides that detect SARS-CoV-2 surface protein S.
Hajikarimlou M, Hooshyar M, Moutaoufik MT, Aly KA, Azad T, Takallou S, Jagadeesan S, Phanse S, Said KB, Samanfar B, Bell JC, Dehne F, Babu M, Golshani A. Hajikarimlou M, et al. Among authors: phanse s. NAR Genom Bioinform. 2022 Aug 22;4(3):lqac058. doi: 10.1093/nargab/lqac058. eCollection 2022 Sep. NAR Genom Bioinform. 2022. PMID: 36004308 Free PMC article.
NleH defines a new family of bacterial effector kinases.
Grishin AM, Cherney M, Anderson DH, Phanse S, Babu M, Cygler M. Grishin AM, et al. Among authors: phanse s. Structure. 2014 Feb 4;22(2):250-9. doi: 10.1016/j.str.2013.11.006. Epub 2013 Dec 26. Structure. 2014. PMID: 24373767 Free article.
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.
Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A. Babu M, et al. Among authors: phanse s. PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586182 Free PMC article.
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.
Vlasblom J, Zuberi K, Rodriguez H, Arnold R, Gagarinova A, Deineko V, Kumar A, Leung E, Rizzolo K, Samanfar B, Chang L, Phanse S, Golshani A, Greenblatt JF, Houry WA, Emili A, Morris Q, Bader G, Babu M. Vlasblom J, et al. Among authors: phanse s. Bioinformatics. 2015 Feb 1;31(3):306-10. doi: 10.1093/bioinformatics/btu671. Epub 2014 Oct 13. Bioinformatics. 2015. PMID: 25316676 Free PMC article.
Mitochondrial targets for pharmacological intervention in human disease.
Malty RH, Jessulat M, Jin K, Musso G, Vlasblom J, Phanse S, Zhang Z, Babu M. Malty RH, et al. Among authors: phanse s. J Proteome Res. 2015 Jan 2;14(1):5-21. doi: 10.1021/pr500813f. Epub 2014 Dec 12. J Proteome Res. 2015. PMID: 25367773 Free PMC article. Review.
Efficient prediction of human protein-protein interactions at a global scale.
Schoenrock A, Samanfar B, Pitre S, Hooshyar M, Jin K, Phillips CA, Wang H, Phanse S, Omidi K, Gui Y, Alamgir M, Wong A, Barrenäs F, Babu M, Benson M, Langston MA, Green JR, Dehne F, Golshani A. Schoenrock A, et al. Among authors: phanse s. BMC Bioinformatics. 2014 Dec 10;15(1):383. doi: 10.1186/s12859-014-0383-1. BMC Bioinformatics. 2014. PMID: 25492630 Free PMC article.
Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining.
Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, Zhang Z, Vizeacoumar F, Krogan NJ, Freywald A, Golshani A, Babu M. Jessulat M, et al. Among authors: phanse s. Mol Cell Biol. 2015 Jul;35(14):2448-63. doi: 10.1128/MCB.00007-15. Epub 2015 May 11. Mol Cell Biol. 2015. PMID: 25963654 Free PMC article.
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.
Kumar A, Beloglazova N, Bundalovic-Torma C, Phanse S, Deineko V, Gagarinova A, Musso G, Vlasblom J, Lemak S, Hooshyar M, Minic Z, Wagih O, Mosca R, Aloy P, Golshani A, Parkinson J, Emili A, Yakunin AF, Babu M. Kumar A, et al. Among authors: phanse s. Cell Rep. 2016 Jan 26;14(3):648-661. doi: 10.1016/j.celrep.2015.12.060. Epub 2016 Jan 8. Cell Rep. 2016. PMID: 26774489 Free article.
80 results