Bera P - Search Results

1

Hi-C embedded polymer model of Escherichia coli reveals the origin of heterogeneous subdiffusion in chromosomal loci.

Bera P, Wasim A, Mondal J. Bera P, et al. Phys Rev E. 2022 Jun;105(6-1):064402. doi: 10.1103/PhysRevE.105.064402. Phys Rev E. 2022. PMID: 35854496

2

Mechanistic underpinning of cell aspect ratio-dependent emergent collective motions in swarming bacteria.

Bera P , Wasim A , Mondal J , Ghosh P . Bera P , et al. Soft Matter. 2021 Aug 21;17(31):7322-7331. doi: 10.1039/d1sm00311a. Epub 2021 Jul 21. Soft Matter. 2021. PMID: 34286783

3

Interpretation of organizational role of proteins on E. coli nucleoid via Hi-C integrated model.

Wasim A, Gupta A, Bera P, Mondal J. Wasim A, et al. Among authors: bera p. Biophys J. 2023 Jan 3;122(1):63-81. doi: 10.1016/j.bpj.2022.11.2938. Epub 2022 Nov 25. Biophys J. 2023. PMID: 36435970 Free PMC article.

4

A mechanistic understanding of microcolony morphogenesis: coexistence of mobile and sessile aggregates.

Bera P, Wasim A, Ghosh P. Bera P, et al. Soft Matter. 2023 Feb 1;19(5):1034-1045. doi: 10.1039/d2sm01365g. Soft Matter. 2023. PMID: 36648295

5

Development of a Data-Driven Integrative Model of a Bacterial Chromosome.

Wasim A, Bera P, Mondal J. Wasim A, et al. Among authors: bera p. J Chem Theory Comput. 2024 Feb 27;20(4):1673-1688. doi: 10.1021/acs.jctc.3c00118. Epub 2023 Apr 21. J Chem Theory Comput. 2024. PMID: 37083406

6

Interplay of cell motility and self-secreted extracellular polymeric substance induced depletion effects on spatial patterning in a growing microbial colony.

Bera P, Wasim A, Ghosh P. Bera P, et al. Soft Matter. 2023 Nov 1;19(42):8136-8149. doi: 10.1039/d3sm01144e. Soft Matter. 2023. PMID: 37847026

7

Elucidation of Spatial Positioning of Ribosomes around Chromosome in Escherichia coli Cytoplasm via a Data-Informed Polymer-Based Model.

Wasim A, Bera P, Mondal J. Wasim A, et al. Among authors: bera p. J Phys Chem B. 2024 Apr 11;128(14):3368-3382. doi: 10.1021/acs.jpcb.4c01210. Epub 2024 Apr 1. J Phys Chem B. 2024. PMID: 38560890

8

Machine learning unravels inherent structural patterns in Escherichia coli Hi-C matrices and predicts chromosome dynamics.

Bera P, Mondal J. Bera P, et al. Nucleic Acids Res. 2024 Oct 14;52(18):10836-10849. doi: 10.1093/nar/gkae749. Nucleic Acids Res. 2024. PMID: 39217471 Free PMC article.

9

Protein translation can fluidize bacterial cytoplasm.

Bera P, Wasim A, Bakshi S, Mondal J. Bera P, et al. PNAS Nexus. 2024 Nov 22;3(12):pgae532. doi: 10.1093/pnasnexus/pgae532. eCollection 2024 Dec. PNAS Nexus. 2024. PMID: 39660062 Free PMC article.

10

Diverse morphology and motility induced emergent order in bacterial collectives.

Mondal K, Bera P, Ghosh P. Mondal K, et al. Among authors: bera p. J Chem Phys. 2024 Sep 7;161(9):094908. doi: 10.1063/5.0220700. J Chem Phys. 2024. PMID: 39230379

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