Lyumkis D - Search Results

1

Single-Particle Cryo-EM Data Collection with Stage Tilt using Leginon.

Aiyer S, Strutzenberg TS, Bowman ME, Noel JP, Lyumkis D. Aiyer S, et al. Among authors: lyumkis d. J Vis Exp. 2022 Jul 1;(185):10.3791/64136. doi: 10.3791/64136. J Vis Exp. 2022. PMID: 35848829 Free PMC article.

2

Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS. Milazzo AC, et al. Among authors: lyumkis d. J Struct Biol. 2011 Dec;176(3):404-8. doi: 10.1016/j.jsb.2011.09.002. Epub 2011 Sep 10. J Struct Biol. 2011. PMID: 21933715 Free PMC article.

3

Likelihood-based classification of cryo-EM images using FREALIGN.

Lyumkis D, Brilot AF, Theobald DL, Grigorieff N. Lyumkis D, et al. J Struct Biol. 2013 Sep;183(3):377-388. doi: 10.1016/j.jsb.2013.07.005. Epub 2013 Jul 17. J Struct Biol. 2013. PMID: 23872434 Free PMC article.

4

Optimod--an automated approach for constructing and optimizing initial models for single-particle electron microscopy.

Lyumkis D, Vinterbo S, Potter CS, Carragher B. Lyumkis D, et al. J Struct Biol. 2013 Dec;184(3):417-26. doi: 10.1016/j.jsb.2013.10.009. Epub 2013 Oct 24. J Struct Biol. 2013. PMID: 24161732 Free PMC article.

5

Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits.

Passos DO, Lyumkis D. Passos DO, et al. Among authors: lyumkis d. J Struct Biol. 2015 Nov;192(2):235-44. doi: 10.1016/j.jsb.2015.10.002. Epub 2015 Oct 22. J Struct Biol. 2015. PMID: 26470814

6

Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D. Tan YZ, et al. Among authors: lyumkis d. Nat Methods. 2017 Aug;14(8):793-796. doi: 10.1038/nmeth.4347. Epub 2017 Jul 3. Nat Methods. 2017. PMID: 28671674 Free PMC article.

7

Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant.

Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D. Tan YZ, et al. Among authors: lyumkis d. Nat Commun. 2018 Sep 7;9(1):3628. doi: 10.1038/s41467-018-06076-6. Nat Commun. 2018. PMID: 30194371 Free PMC article.

8

Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d.

Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D. Zhang C, et al. Among authors: lyumkis d. Cell. 2018 Sep 20;175(1):212-223.e17. doi: 10.1016/j.cell.2018.09.001. Cell. 2018. PMID: 30241607 Free PMC article.

9

Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification.

Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D. Zhang C, et al. Among authors: lyumkis d. Ultramicroscopy. 2019 Aug;203:170-180. doi: 10.1016/j.ultramic.2018.11.016. Epub 2018 Nov 29. Ultramicroscopy. 2019. PMID: 30528101 Free PMC article.

10

Challenges and opportunities in cryo-EM single-particle analysis.

Lyumkis D. Lyumkis D. J Biol Chem. 2019 Mar 29;294(13):5181-5197. doi: 10.1074/jbc.REV118.005602. Epub 2019 Feb 25. J Biol Chem. 2019. PMID: 30804214 Free PMC article. Review.

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