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CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Wittig A, Miranda F, Hölzer M, Altenburg T, Bartoszewicz JM, Beyvers S, Dieckmann MA, Genske U, Giese SH, Nowicka M, Richard H, Schiebenhoefer H, Schmachtenberg AJ, Sieben P, Tang M, Tembrockhaus J, Renard BY, Fuchs S. Wittig A, et al. Among authors: fuchs s. Bioinformatics. 2022 Sep 2;38(17):4223-4225. doi: 10.1093/bioinformatics/btac411. Bioinformatics. 2022. PMID: 35799354
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: fuchs s. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: fuchs s. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021.
Oh DY, Hölzer M, Paraskevopoulou S, Trofimova M, Hartkopf F, Budt M, Wedde M, Richard H, Haldemann B, Domaszewska T, Reiche J, Keeren K, Radonić A, Ramos Calderón JP, Smith MR, Brinkmann A, Trappe K, Drechsel O, Klaper K, Hein S, Hildt E, Haas W, Calvignac-Spencer S, Semmler T, Dürrwald R, Thürmer A, Drosten C, Fuchs S, Kröger S, von Kleist M, Wolff T; Integrated Molecular Surveillance for SARS-CoV-2 (IMS-SC2) Laboratory Network. Oh DY, et al. Among authors: fuchs s. Clin Infect Dis. 2022 Aug 15;75(Suppl 1):S110-S120. doi: 10.1093/cid/ciac399. Clin Infect Dis. 2022. PMID: 35749674 Free PMC article.
Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022.
Kohler C, King J, Stacker L, Goller KV, Moritz J, Pohlmann A, Nath N, Tzvetkova A, Rieck M, Paraskevopoulou S, Beslic D, Hölzer M, Fuchs S, Ziemann J, Kaderali L, Beer M, Hübner NO, Becker K. Kohler C, et al. Among authors: fuchs s. Emerg Microbes Infect. 2023 Dec;12(2):2245916. doi: 10.1080/22221751.2023.2245916. Emerg Microbes Infect. 2023. PMID: 37585712 Free PMC article.
Comprehensive integrated NGS-based surveillance and contact-network modeling unravels transmission dynamics of vancomycin-resistant enterococci in a high-risk population within a tertiary care hospital.
Neumann B, Bender JK, Maier BF, Wittig A, Fuchs S, Brockmann D, Semmler T, Einsele H, Kraus S, Wieler LH, Vogel U, Werner G. Neumann B, et al. Among authors: fuchs s. PLoS One. 2020 Jun 24;15(6):e0235160. doi: 10.1371/journal.pone.0235160. eCollection 2020. PLoS One. 2020. PMID: 32579600 Free PMC article.
1,985 results