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Page 1
Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes.
Gagalova KK, Warren RL, Coombe L, Wong J, Nip KM, Yuen MMS, Whitehill JGA, Celedon JM, Ritland C, Taylor GA, Cheng D, Plettner P, Hammond SA, Mohamadi H, Zhao Y, Moore RA, Mungall AJ, Boyle B, Laroche J, Cottrell J, Mackay JJ, Lamothe M, Gérardi S, Isabel N, Pavy N, Jones SJM, Bohlmann J, Bousquet J, Birol I. Gagalova KK, et al. Among authors: jones sjm. Plant J. 2022 Sep;111(5):1469-1485. doi: 10.1111/tpj.15889. Epub 2022 Jul 16. Plant J. 2022. PMID: 35789009 Free article.
Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar.
Ralph S, Oddy C, Cooper D, Yueh H, Jancsik S, Kolosova N, Philippe RN, Aeschliman D, White R, Huber D, Ritland CE, Benoit F, Rigby T, Nantel A, Butterfield YS, Kirkpatrick R, Chun E, Liu J, Palmquist D, Wynhoven B, Stott J, Yang G, Barber S, Holt RA, Siddiqui A, Jones SJ, Marra MA, Ellis BE, Douglas CJ, Ritland K, Bohlmann J. Ralph S, et al. Mol Ecol. 2006 Apr;15(5):1275-97. doi: 10.1111/j.1365-294X.2006.02824.x. Mol Ecol. 2006. PMID: 16626454
Physical map-assisted whole-genome shotgun sequence assemblies.
Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang SP, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJ. Warren RL, et al. Genome Res. 2006 Jun;16(6):768-75. doi: 10.1101/gr.5090606. Genome Res. 2006. PMID: 16741162 Free PMC article.
Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome.
Ralph SG, Yueh H, Friedmann M, Aeschliman D, Zeznik JA, Nelson CC, Butterfield YS, Kirkpatrick R, Liu J, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J. Ralph SG, et al. Plant Cell Environ. 2006 Aug;29(8):1545-70. doi: 10.1111/j.1365-3040.2006.01532.x. Plant Cell Environ. 2006. PMID: 16898017 Free article.
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD. McLeod MP, et al. Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15582-7. doi: 10.1073/pnas.0607048103. Epub 2006 Oct 9. Proc Natl Acad Sci U S A. 2006. PMID: 17030794 Free PMC article.
THOR: targeted high-throughput ortholog reconstructor.
Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. Bainbridge MN, et al. Bioinformatics. 2007 Oct 1;23(19):2622-4. doi: 10.1093/bioinformatics/btl513. Epub 2006 Oct 11. Bioinformatics. 2007. PMID: 17038343
Assembling millions of short DNA sequences using SSAKE.
Warren RL, Sutton GG, Jones SJ, Holt RA. Warren RL, et al. Bioinformatics. 2007 Feb 15;23(4):500-1. doi: 10.1093/bioinformatics/btl629. Epub 2006 Dec 8. Bioinformatics. 2007. PMID: 17158514 Free PMC article.
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE. Kelleher CT, et al. Plant J. 2007 Jun;50(6):1063-78. doi: 10.1111/j.1365-313X.2007.03112.x. Epub 2007 May 3. Plant J. 2007. PMID: 17488239 Free article.
487 results