Zheng D - Search Results

1

HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements.

Singh VK, Misra R, Almo SC, Steidl UG, Bülow HE, Zheng D. Singh VK, et al. Among authors: zheng d. Bioinformatics. 2022 Aug 10;38(16):4036-4038. doi: 10.1093/bioinformatics/btac437. Bioinformatics. 2022. PMID: 35771633 Free PMC article.

2

A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1.

Wontakal SN, Guo X, Will B, Shi M, Raha D, Mahajan MC, Weissman S, Snyder M, Steidl U, Zheng D, Skoultchi AI. Wontakal SN, et al. Among authors: zheng d. PLoS Genet. 2011 Jun;7(6):e1001392. doi: 10.1371/journal.pgen.1001392. Epub 2011 Jun 9. PLoS Genet. 2011. PMID: 21695229 Free PMC article.

3

Stereo3D: using stereo images to enrich 3D visualization.

Liu Y, Singh VK, Zheng D. Liu Y, et al. Among authors: zheng d. Bioinformatics. 2020 Aug 15;36(14):4189-4190. doi: 10.1093/bioinformatics/btaa521. Bioinformatics. 2020. PMID: 32415957 Free PMC article.

4

The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity.

Chrysanthou S, Tang Q, Lee J, Taylor SJ, Zhao Y, Steidl U, Zheng D, Dawlaty MM. Chrysanthou S, et al. Among authors: zheng d. Nucleic Acids Res. 2022 Apr 8;50(6):3169-3189. doi: 10.1093/nar/gkac089. Nucleic Acids Res. 2022. PMID: 35150568 Free PMC article.

5

PRC2-Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1-Targeted Therapy via Enhanced Viral Mimicry.

Patel AJ, Warda S, Maag JLV, Misra R, Miranda-Román MA, Pachai MR, Lee CJ, Li D, Wang N, Bayshtok G, Fishinevich E, Meng Y, Wong EWP, Yan J, Giff E, Pappalardi MB, McCabe MT, Fletcher JA, Rudin CM, Chandarlapaty S, Scandura JM, Koche RP, Glass JL, Antonescu CR, Zheng D, Chen Y, Chi P. Patel AJ, et al. Among authors: zheng d. Cancer Discov. 2022 Sep 2;12(9):2120-2139. doi: 10.1158/2159-8290.CD-21-1671. Cancer Discov. 2022. PMID: 35789380 Free PMC article.

6

A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm.

Piszczatowski RT, Schwenger E, Sundaravel S, Stein CM, Liu Y, Stanley P, Verma A, Zheng D, Seidel RD, Almo SC, Townley RA, Bülow HE, Steidl U. Piszczatowski RT, et al. Among authors: zheng d. J Exp Med. 2022 Nov 7;219(11):e20212552. doi: 10.1084/jem.20212552. Epub 2022 Sep 6. J Exp Med. 2022. PMID: 36066492 Free PMC article.

7

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison.

Ferrena A, Zheng XY, Jackson K, Hoang B, Morrow BE, Zheng D. Ferrena A, et al. Among authors: zheng d, zheng xy. NAR Genom Bioinform. 2024 Sep 28;6(4):lqae134. doi: 10.1093/nargab/lqae134. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39345754 Free PMC article.

8

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.

Zhao D, Zheng D. Zhao D, et al. Among authors: zheng d. BMC Bioinformatics. 2018 Dec 27;19(1):544. doi: 10.1186/s12859-018-2577-4. BMC Bioinformatics. 2018. PMID: 30587107 Free PMC article.

9

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes.

Astorkia M, Lachman HM, Zheng D. Astorkia M, et al. Among authors: zheng d. J Neurodev Disord. 2022 May 2;14(1):29. doi: 10.1186/s11689-022-09441-1. J Neurodev Disord. 2022. PMID: 35501678 Free PMC article.

10

An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.

Bera BS, Thompson TV, Sosa E, Nomaru H, Reynolds D, Dubin RA, Maqbool SB, Zheng D, Morrow BE, Greally JM, Suzuki M. Bera BS, et al. Among authors: zheng d. Epigenetics Chromatin. 2023 Apr 28;16(1):14. doi: 10.1186/s13072-023-00486-7. Epigenetics Chromatin. 2023. PMID: 37118773 Free PMC article.

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