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Simulating domain architecture evolution.
Cui X, Xue Y, McCormack C, Garces A, Rachman TW, Yi Y, Stolzer M, Durand D. Cui X, et al. Among authors: durand d. Bioinformatics. 2022 Jun 24;38(Suppl 1):i134-i142. doi: 10.1093/bioinformatics/btac242. Bioinformatics. 2022. PMID: 35758772 Free PMC article.
Reconciliation with non-binary species trees.
Vernot B, Stolzer M, Goldman A, Durand D. Vernot B, et al. Among authors: durand d. Comput Syst Bioinformatics Conf. 2007;6:441-52. doi: 10.1142/9781860948732_0044. Comput Syst Bioinformatics Conf. 2007. PMID: 17951846 Free article.
Reconciliation with non-binary species trees.
Vernot B, Stolzer M, Goldman A, Durand D. Vernot B, et al. Among authors: durand d. J Comput Biol. 2008 Oct;15(8):981-1006. doi: 10.1089/cmb.2008.0092. J Comput Biol. 2008. PMID: 18808330 Free PMC article.
Family classification without domain chaining.
Joseph JM, Durand D. Joseph JM, et al. Among authors: durand d. Bioinformatics. 2009 Jun 15;25(12):i45-53. doi: 10.1093/bioinformatics/btp207. Bioinformatics. 2009. PMID: 19478015 Free PMC article.
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
Stolzer M, Lai H, Xu M, Sathaye D, Vernot B, Durand D. Stolzer M, et al. Among authors: durand d. Bioinformatics. 2012 Sep 15;28(18):i409-i415. doi: 10.1093/bioinformatics/bts386. Bioinformatics. 2012. PMID: 22962460 Free PMC article.
MOTIVATION: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. ...AVAILABILITY: Our algorithms have been implemented in Notung, a freely available phylogenetic …
MOTIVATION: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene fami …
How old is my gene?
Capra JA, Stolzer M, Durand D, Pollard KS. Capra JA, et al. Among authors: durand d. Trends Genet. 2013 Nov;29(11):659-68. doi: 10.1016/j.tig.2013.07.001. Epub 2013 Aug 1. Trends Genet. 2013. PMID: 23915718 Free PMC article. Review.
Xenolog classification.
Darby CA, Stolzer M, Ropp PJ, Barker D, Durand D. Darby CA, et al. Among authors: durand d. Bioinformatics. 2017 Mar 1;33(5):640-649. doi: 10.1093/bioinformatics/btw686. Bioinformatics. 2017. PMID: 27998934 Free PMC article.
1,214 results