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Persisting uropathogenic Escherichia coli lineages show signatures of niche-specific within-host adaptation mediated by mobile genetic elements.
Thänert R, Choi J, Reske KA, Hink T, Thänert A, Wallace MA, Wang B, Seiler S, Cass C, Bost MH, Struttmann EL, Iqbal ZH, Sax SR, Fraser VJ, Baker AW, Foy KR, Williams B, Xu B, Capocci-Tolomeo P, Lautenbach E, Burnham CD, Dubberke ER, Kwon JH, Dantas G; CDC Prevention Epicenters Program. Thänert R, et al. Among authors: struttmann el. Cell Host Microbe. 2022 Jul 13;30(7):1034-1047.e6. doi: 10.1016/j.chom.2022.04.008. Epub 2022 May 10. Cell Host Microbe. 2022. PMID: 35545083 Free PMC article.
Gut microbiome correlates of recurrent urinary tract infection: a longitudinal, multi-center study.
Choi J, Thänert R, Reske KA, Nickel KB, Olsen MA, Hink T, Thänert A, Wallace MA, Wang B, Cass C, Barlet MH, Struttmann EL, Iqbal ZH, Sax SR, Fraser VJ, Baker AW, Foy KR, Williams B, Xu B, Capocci-Tolomeo P, Lautenbach E, Burnham CD, Dubberke ER, Dantas G, Kwon JH; CDC Prevention Epicenters Program. Choi J, et al. Among authors: struttmann el. EClinicalMedicine. 2024 Apr 26;71:102490. doi: 10.1016/j.eclinm.2024.102490. eCollection 2024 May. EClinicalMedicine. 2024. PMID: 38813445 Free PMC article.
Genomic surveillance of Clostridioides difficile transmission and virulence in a healthcare setting.
Newcomer EP, Fishbein SRS, Zhang K, Hink T, Reske KA, Cass C, Iqbal ZH, Struttmann EL, Dubberke ER, Dantas G. Newcomer EP, et al. Among authors: struttmann el. medRxiv [Preprint]. 2023 Dec 4:2023.09.26.23295023. doi: 10.1101/2023.09.26.23295023. medRxiv. 2023. Update in: mBio. 2024 Mar 13;15(3):e0330023. doi: 10.1128/mbio.03300-23 PMID: 38105952 Free PMC article. Updated. Preprint.