Honaas L - Search Results

1

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.

Hadish JA, Biggs TD, Shealy BT, Bender MR, McKnight CB, Wytko C, Smith MC, Feltus FA, Honaas L, Ficklin SP. Hadish JA, et al. Among authors: honaas l. BMC Bioinformatics. 2022 May 2;23(1):156. doi: 10.1186/s12859-022-04629-7. BMC Bioinformatics. 2022. PMID: 35501696 Free PMC article.

2

Transcriptomics of Differential Ripening in 'd'Anjou' Pear (Pyrus communis L.).

Honaas L, Hargarten H, Hadish J, Ficklin SP, Serra S, Musacchi S, Wafula E, Mattheis J, dePamphilis CW, Rudell D. Honaas L, et al. Front Plant Sci. 2021 Jun 16;12:609684. doi: 10.3389/fpls.2021.609684. eCollection 2021. Front Plant Sci. 2021. PMID: 34220875 Free PMC article.

3

Towards identification of postharvest fruit quality transcriptomic markers in Malus domestica.

Hadish JA, Hargarten HL, Zhang H, Mattheis JP, Honaas LA, Ficklin SP. Hadish JA, et al. Among authors: honaas la. PLoS One. 2024 Mar 6;19(3):e0297015. doi: 10.1371/journal.pone.0297015. eCollection 2024. PLoS One. 2024. PMID: 38446822 Free PMC article.

4

Rating pome fruit quality traits using deep learning and image processing.

Nguyen NH, Michaud J, Mogollon R, Zhang H, Hargarten H, Leisso R, Torres CA, Honaas L, Ficklin S. Nguyen NH, et al. Among authors: honaas l. Plant Direct. 2024 Oct 8;8(10):e70005. doi: 10.1002/pld3.70005. eCollection 2024 Oct. Plant Direct. 2024. PMID: 39385758 Free PMC article.

5

Transcriptomics of long-term, low oxygen storage coupled with ethylene signaling interference suggests neofunctionalization of hypoxia response pathways in apple (Malus domestica).

Hadish JA, Hargarten HL, Zhang H, Mattheis JP, Ficklin SP, Honaas LA. Hadish JA, et al. Among authors: honaas la. Plant Direct. 2024 Dec 20;8(12):e70025. doi: 10.1002/pld3.70025. eCollection 2024 Dec. Plant Direct. 2024. PMID: 39712348 Free PMC article.

6

Study Design for Sequencing Studies.

Honaas LA, Altman NS, Krzywinski M. Honaas LA, et al. Methods Mol Biol. 2016;1418:39-66. doi: 10.1007/978-1-4939-3578-9_3. Methods Mol Biol. 2016. PMID: 27008009

7

A practical examination of RNA isolation methods for European pear (Pyrus communis).

Honaas L, Kahn E. Honaas L, et al. BMC Res Notes. 2017 Jun 29;10(1):237. doi: 10.1186/s13104-017-2564-2. BMC Res Notes. 2017. PMID: 28662720 Free PMC article.

8

Risk versus reward: host dependent parasite mortality rates and phenotypes in the facultative generalist Triphysaria versicolor.

Honaas LA, Jones S, Farrell N, Kamerow W, Zhang H, Vescio K, Altman NS, Yoder JI, dePamphilis CW. Honaas LA, et al. BMC Plant Biol. 2019 Aug 1;19(1):334. doi: 10.1186/s12870-019-1856-1. BMC Plant Biol. 2019. PMID: 31370799 Free PMC article.

9

PlantTribes2: Tools for comparative gene family analysis in plant genomics.

Wafula EK, Zhang H, Von Kuster G, Leebens-Mack JH, Honaas LA, dePamphilis CW. Wafula EK, et al. Among authors: honaas la. Front Plant Sci. 2023 Jan 31;13:1011199. doi: 10.3389/fpls.2022.1011199. eCollection 2022. Front Plant Sci. 2023. PMID: 36798801 Free PMC article.

10

Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes.

Zhang H, Wafula EK, Eilers J, Harkess AE, Ralph PE, Timilsena PR, dePamphilis CW, Waite JM, Honaas LA. Zhang H, et al. Front Plant Sci. 2022 Nov 14;13:975942. doi: 10.3389/fpls.2022.975942. eCollection 2022. Front Plant Sci. 2022. PMID: 36452099 Free PMC article.

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