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GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
Kupkova K, Mosquera JV, Smith JP, Stolarczyk M, Danehy TL, Lawson JT, Xue B, Stubbs JT 4th, LeRoy N, Sheffield NC. Kupkova K, et al. Among authors: sheffield nc. BMC Genomics. 2022 Apr 12;23(1):299. doi: 10.1186/s12864-022-08467-y. BMC Genomics. 2022. PMID: 35413804 Free PMC article.
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.
Simovski B, Kanduri C, Gundersen S, Titov D, Domanska D, Bock C, Bossini-Castillo L, Chikina M, Favorov A, Layer RM, Mironov AA, Quinlan AR, Sheffield NC, Trynka G, Sandve GK. Simovski B, et al. Among authors: sheffield nc. Nucleic Acids Res. 2018 Jul 2;46(W1):W186-W193. doi: 10.1093/nar/gky474. Nucleic Acids Res. 2018. PMID: 29873782 Free PMC article.
Refgenie: a reference genome resource manager.
Stolarczyk M, Reuter VP, Smith JP, Magee NE, Sheffield NC. Stolarczyk M, et al. Among authors: sheffield nc. Gigascience. 2020 Feb 1;9(2):giz149. doi: 10.1093/gigascience/giz149. Gigascience. 2020. PMID: 31995185 Free PMC article.
Analytical Approaches for ATAC-seq Data Analysis.
Smith JP, Sheffield NC. Smith JP, et al. Among authors: sheffield nc. Curr Protoc Hum Genet. 2020 Jun;106(1):e101. doi: 10.1002/cphg.101. Curr Protoc Hum Genet. 2020. PMID: 32543102 Free PMC article.
COCOA: coordinate covariation analysis of epigenetic heterogeneity.
Lawson JT, Smith JP, Bekiranov S, Garrett-Bakelman FE, Sheffield NC. Lawson JT, et al. Among authors: sheffield nc. Genome Biol. 2020 Sep 7;21(1):240. doi: 10.1186/s13059-020-02139-4. Genome Biol. 2020. PMID: 32894181 Free PMC article.
64 results