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Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming.
Peng Z, Maciel-Guerra A, Baker M, Zhang X, Hu Y, Wang W, Rong J, Zhang J, Xue N, Barrow P, Renney D, Stekel D, Williams P, Liu L, Chen J, Li F, Dottorini T. Peng Z, et al. Among authors: liu l. PLoS Comput Biol. 2022 Mar 25;18(3):e1010018. doi: 10.1371/journal.pcbi.1010018. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35333870 Free PMC article.
Machine learning and metagenomics reveal shared antimicrobial resistance profiles across multiple chicken farms and abattoirs in China.
Baker M, Zhang X, Maciel-Guerra A, Dong Y, Wang W, Hu Y, Renney D, Hu Y, Liu L, Li H, Tong Z, Zhang M, Geng Y, Zhao L, Hao Z, Senin N, Chen J, Peng Z, Li F, Dottorini T. Baker M, et al. Among authors: liu l. Nat Food. 2023 Aug;4(8):707-720. doi: 10.1038/s43016-023-00814-w. Epub 2023 Aug 10. Nat Food. 2023. PMID: 37563495 Free PMC article.
Convergence of resistance and evolutionary responses in Escherichia coli and Salmonella enterica co-inhabiting chicken farms in China.
Baker M, Zhang X, Maciel-Guerra A, Babaarslan K, Dong Y, Wang W, Hu Y, Renney D, Liu L, Li H, Hossain M, Heeb S, Tong Z, Pearcy N, Zhang M, Geng Y, Zhao L, Hao Z, Senin N, Chen J, Peng Z, Li F, Dottorini T. Baker M, et al. Among authors: liu l. Nat Commun. 2024 Jan 5;15(1):206. doi: 10.1038/s41467-023-44272-1. Nat Commun. 2024. PMID: 38182559 Free PMC article.
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