McHardy AC - Search Results

1

Peptide microarrays coupled to machine learning reveal individual epitopes from human antibody responses with neutralizing capabilities against SARS-CoV-2.

Hotop SK, Reimering S, Shekhar A, Asgari E, Beutling U, Dahlke C, Fathi A, Khan F, Lütgehetmann M, Ballmann R, Gerstner A, Tegge W, Cicin-Sain L, Bilitewski U, McHardy AC, Brönstrup M. Hotop SK, et al. Among authors: mchardy ac. Emerg Microbes Infect. 2022 Dec;11(1):1037-1048. doi: 10.1080/22221751.2022.2057874. Emerg Microbes Infect. 2022. PMID: 35320064 Free PMC article.

2

In Silico Vaccine Strain Prediction for Human Influenza Viruses.

Klingen TR, Reimering S, Guzmán CA, McHardy AC. Klingen TR, et al. Among authors: mchardy ac. Trends Microbiol. 2018 Feb;26(2):119-131. doi: 10.1016/j.tim.2017.09.001. Epub 2017 Oct 9. Trends Microbiol. 2018. PMID: 29032900 Review.

3

Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses.

Klingen TR, Reimering S, Loers J, Mooren K, Klawonn F, Krey T, Gabriel G, McHardy AC. Klingen TR, et al. Among authors: mchardy ac. Sci Rep. 2018 Jan 10;8(1):373. doi: 10.1038/s41598-017-18791-z. Sci Rep. 2018. PMID: 29321538 Free PMC article.

4

MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples.

Asgari E, Garakani K, McHardy AC, Mofrad MRK. Asgari E, et al. Among authors: mchardy ac. Bioinformatics. 2018 Jul 1;34(13):i32-i42. doi: 10.1093/bioinformatics/bty296. Bioinformatics. 2018. PMID: 29950008 Free PMC article.

5

MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples.

Asgari E, Garakani K, McHardy AC, Mofrad MRK. Asgari E, et al. Among authors: mchardy ac. Bioinformatics. 2019 Mar 15;35(6):1082. doi: 10.1093/bioinformatics/bty652. Bioinformatics. 2019. PMID: 30099528 Free PMC article. No abstract available.

6

Software for Characterizing the Antigenic and Genetic Evolution of Human Influenza Viruses.

Reimering S, McHardy AC. Reimering S, et al. Among authors: mchardy ac. Methods Mol Biol. 2018;1836:551-565. doi: 10.1007/978-1-4939-8678-1_26. Methods Mol Biol. 2018. PMID: 30151591

7

A Fréchet tree distance measure to compare phylogeographic spread paths across trees.

Reimering S, Muñoz S, McHardy AC. Reimering S, et al. Among authors: mchardy ac. Sci Rep. 2018 Nov 19;8(1):17000. doi: 10.1038/s41598-018-35421-4. Sci Rep. 2018. PMID: 30451977 Free PMC article.

8

DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection.

Asgari E, Münch PC, Lesker TR, McHardy AC, Mofrad MRK. Asgari E, et al. Among authors: mchardy ac. Bioinformatics. 2019 Jul 15;35(14):2498-2500. doi: 10.1093/bioinformatics/bty954. Bioinformatics. 2019. PMID: 30500871

9

Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX).

Asgari E, McHardy AC, Mofrad MRK. Asgari E, et al. Among authors: mchardy ac. Sci Rep. 2019 Mar 5;9(1):3577. doi: 10.1038/s41598-019-38746-w. Sci Rep. 2019. PMID: 30837494 Free PMC article.

10

Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic.

Reimering S, Muñoz S, McHardy AC. Reimering S, et al. Among authors: mchardy ac. PLoS Comput Biol. 2020 Feb 7;16(2):e1007101. doi: 10.1371/journal.pcbi.1007101. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32032362 Free PMC article.

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