Wang Y - Search Results

1

Lamin B1 deletion in myeloid neoplasms causes nuclear anomaly and altered hematopoietic stem cell function.

Reilly A, Philip Creamer J, Stewart S, Stolla MC, Wang Y, Du J, Wellington R, Busch S, Estey EH, Becker PS, Fang M, Keel SB, Abkowitz JL, Soma LA, Ma J, Duan Z, Doulatov S. Reilly A, et al. Among authors: wang y. Cell Stem Cell. 2022 Apr 7;29(4):577-592.e8. doi: 10.1016/j.stem.2022.02.010. Epub 2022 Mar 11. Cell Stem Cell. 2022. PMID: 35278369 Free PMC article.

2

Predicting CTCF-mediated chromatin loops using CTCF-MP.

Zhang R, Wang Y, Yang Y, Zhang Y, Ma J. Zhang R, et al. Among authors: wang y. Bioinformatics. 2018 Jul 1;34(13):i133-i141. doi: 10.1093/bioinformatics/bty248. Bioinformatics. 2018. PMID: 29949986 Free PMC article.

3

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.

Chen Y, Zhang Y, Wang Y, Zhang L, Brinkman EK, Adam SA, Goldman R, van Steensel B, Ma J, Belmont AS. Chen Y, et al. Among authors: wang y. J Cell Biol. 2018 Nov 5;217(11):4025-4048. doi: 10.1083/jcb.201807108. Epub 2018 Aug 28. J Cell Biol. 2018. PMID: 30154186 Free PMC article.

4

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes.

Zhang L, Zhang Y, Chen Y, Gholamalamdari O, Wang Y, Ma J, Belmont AS. Zhang L, et al. Among authors: wang y. Genome Res. 2021 Feb;31(2):251-264. doi: 10.1101/gr.266239.120. Epub 2020 Dec 18. Genome Res. 2021. PMID: 33355299 Free PMC article.

5

SPIN reveals genome-wide landscape of nuclear compartmentalization.

Wang Y, Zhang Y, Zhang R, van Schaik T, Zhang L, Sasaki T, Peric-Hupkes D, Chen Y, Gilbert DM, van Steensel B, Belmont AS, Ma J. Wang Y, et al. Genome Biol. 2021 Jan 14;22(1):36. doi: 10.1186/s13059-020-02253-3. Genome Biol. 2021. PMID: 33446254 Free PMC article.

6

Selective clonal persistence of human retroviruses in vivo: Radial chromatin organization, integration site, and host transcription.

Melamed A, Fitzgerald TW, Wang Y, Ma J, Birney E, Bangham CRM. Melamed A, et al. Among authors: wang y. Sci Adv. 2022 Apr 29;8(17):eabm6210. doi: 10.1126/sciadv.abm6210. Epub 2022 Apr 29. Sci Adv. 2022. PMID: 35486737 Free PMC article.

7

Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome.

Zhu X, Zhang Y, Wang Y, Tian D, Belmont AS, Swedlow JR, Ma J. Zhu X, et al. Among authors: wang y. Nat Methods. 2022 Aug;19(8):911-913. doi: 10.1038/s41592-022-01559-3. Nat Methods. 2022. PMID: 35864167 Free PMC article. No abstract available.

8

Compartmentalization with nuclear landmarks yields random, yet precise, genome organization.

Kamat K, Lao Z, Qi Y, Wang Y, Ma J, Zhang B. Kamat K, et al. Among authors: wang y. Biophys J. 2023 Apr 4;122(7):1376-1389. doi: 10.1016/j.bpj.2023.03.003. Epub 2023 Mar 5. Biophys J. 2023. PMID: 36871158 Free PMC article.

9

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.

Tasan I, Sustackova G, Zhang L, Kim J, Sivaguru M, HamediRad M, Wang Y, Genova J, Ma J, Belmont AS, Zhao H. Tasan I, et al. Among authors: wang y. Nucleic Acids Res. 2018 Sep 28;46(17):e100. doi: 10.1093/nar/gky501. Nucleic Acids Res. 2018. PMID: 29912475 Free PMC article.

10

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.

Calandrelli R, Wen X, Charles Richard JL, Luo Z, Nguyen TC, Chen CJ, Qi Z, Xue S, Chen W, Yan Z, Wu W, Zaleta-Rivera K, Hu R, Yu M, Wang Y, Li W, Ma J, Ren B, Zhong S. Calandrelli R, et al. Among authors: wang y. Nat Commun. 2023 Oct 16;14(1):6519. doi: 10.1038/s41467-023-42274-7. Nat Commun. 2023. PMID: 37845234 Free PMC article.

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