He Y - Search Results

1

Base-resolution prediction of transcription factor binding signals by a deep learning framework.

Zhang Q, He Y, Wang S, Chen Z, Guo Z, Cui Z, Liu Q, Huang DS. Zhang Q, et al. Among authors: he y. PLoS Comput Biol. 2022 Mar 9;18(3):e1009941. doi: 10.1371/journal.pcbi.1009941. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35263332 Free PMC article.

2

A survey on deep learning in DNA/RNA motif mining.

He Y, Shen Z, Zhang Q, Wang S, Huang DS. He Y, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa229. doi: 10.1093/bib/bbaa229. Brief Bioinform. 2021. PMID: 33005921 Free PMC article.

3

Locating transcription factor binding sites by fully convolutional neural network.

Zhang Q, Wang S, Chen Z, He Y, Liu Q, Huang DS. Zhang Q, et al. Among authors: he y. Brief Bioinform. 2021 Sep 2;22(5):bbaa435. doi: 10.1093/bib/bbaa435. Brief Bioinform. 2021. PMID: 33498086 Free PMC article.

4

Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture.

Wang S, Zhang Q, Shen Z, He Y, Chen ZH, Li J, Huang DS. Wang S, et al. Among authors: he y. Mol Ther Nucleic Acids. 2021 Feb 18;24:154-163. doi: 10.1016/j.omtn.2021.02.014. eCollection 2021 Jun 4. Mol Ther Nucleic Acids. 2021. PMID: 33767912 Free PMC article.

5

FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit.

Wang S, He Y, Chen Z, Zhang Q. Wang S, et al. Among authors: he y. IEEE J Biomed Health Inform. 2022 Apr;26(4):1883-1890. doi: 10.1109/JBHI.2021.3117616. Epub 2022 Apr 14. IEEE J Biomed Health Inform. 2022. PMID: 34613923

6

Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates.

He Y, Zhang Q, Wang S, Chen Z, Cui Z, Guo ZH, Huang DS. He Y, et al. IEEE/ACM Trans Comput Biol Bioinform. 2023 Jan-Feb;20(1):616-624. doi: 10.1109/TCBB.2022.3165592. Epub 2023 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 35389869

7

DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes.

Wang S, Zhang Q, He Y, Cui Z, Guo Z, Han K, Huang DS. Wang S, et al. Among authors: he y. PLoS Comput Biol. 2022 Oct 7;18(10):e1010572. doi: 10.1371/journal.pcbi.1010572. eCollection 2022 Oct. PLoS Comput Biol. 2022. PMID: 36206320 Free PMC article.

8

Computational prediction and characterization of cell-type-specific and shared binding sites.

Zhang Q, Teng P, Wang S, He Y, Cui Z, Guo Z, Liu Y, Yuan C, Liu Q, Huang DS. Zhang Q, et al. Among authors: he y. Bioinformatics. 2023 Jan 1;39(1):btac798. doi: 10.1093/bioinformatics/btac798. Bioinformatics. 2023. PMID: 36484687 Free PMC article.

9

DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information.

Cui Z, Wang SG, He Y, Chen ZH, Zhang QH. Cui Z, et al. Among authors: he y. IEEE J Biomed Health Inform. 2023 Sep;27(9):4611-4622. doi: 10.1109/JBHI.2023.3290014. Epub 2023 Sep 6. IEEE J Biomed Health Inform. 2023. PMID: 37368803

10

MV-CVIB: a microbiome-based multi-view convolutional variational information bottleneck for predicting metastatic colorectal cancer.

Cui Z, Wu Y, Zhang QH, Wang SG, He Y, Huang DS. Cui Z, et al. Among authors: he y. Front Microbiol. 2023 Aug 22;14:1238199. doi: 10.3389/fmicb.2023.1238199. eCollection 2023. Front Microbiol. 2023. PMID: 37675425 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

41,157 results

Search Page

Filters