Zhu F - Search Results

1

Sequence determinants of human gene regulatory elements.

Sahu B, Hartonen T, Pihlajamaa P, Wei B, Dave K, Zhu F, Kaasinen E, Lidschreiber K, Lidschreiber M, Daub CO, Cramer P, Kivioja T, Taipale J. Sahu B, et al. Among authors: zhu f. Nat Genet. 2022 Mar;54(3):283-294. doi: 10.1038/s41588-021-01009-4. Epub 2022 Feb 21. Nat Genet. 2022. PMID: 35190730 Free PMC article.

2

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.

Morgunova E, Yin Y, Das PK, Jolma A, Zhu F, Popov A, Xu Y, Nilsson L, Taipale J. Morgunova E, et al. Among authors: zhu f. Elife. 2018 Apr 11;7:e32963. doi: 10.7554/eLife.32963. Elife. 2018. PMID: 29638214 Free PMC article.

3

A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility.

Wei B, Jolma A, Sahu B, Orre LM, Zhong F, Zhu F, Kivioja T, Sur I, Lehtiö J, Taipale M, Taipale J. Wei B, et al. Among authors: zhu f. Nat Biotechnol. 2018 Jul;36(6):521-529. doi: 10.1038/nbt.4138. Epub 2018 May 21. Nat Biotechnol. 2018. PMID: 29786094

4

The interaction landscape between transcription factors and the nucleosome.

Zhu F, Farnung L, Kaasinen E, Sahu B, Yin Y, Wei B, Dodonova SO, Nitta KR, Morgunova E, Taipale M, Cramer P, Taipale J. Zhu F, et al. Nature. 2018 Oct;562(7725):76-81. doi: 10.1038/s41586-018-0549-5. Epub 2018 Sep 24. Nature. 2018. PMID: 30250250 Free PMC article.

5

Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.

Dodonova SO, Zhu F, Dienemann C, Taipale J, Cramer P. Dodonova SO, et al. Among authors: zhu f. Nature. 2020 Apr;580(7805):669-672. doi: 10.1038/s41586-020-2195-y. Epub 2020 Apr 22. Nature. 2020. PMID: 32350470

6

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences.

Jolma A, Zhang J, Mondragón E, Morgunova E, Kivioja T, Laverty KU, Yin Y, Zhu F, Bourenkov G, Morris Q, Hughes TR, Maher LJ 3rd, Taipale J. Jolma A, et al. Among authors: zhu f. Genome Res. 2020 Jul;30(7):962-973. doi: 10.1101/gr.258848.119. Epub 2020 Jul 23. Genome Res. 2020. PMID: 32703884 Free PMC article.

7

A Spatiotemporal Transcriptome Reveals Stalk Development in Pearl Millet.

Mao F, Luo L, Ma N, Qu Q, Chen H, Yi C, Cao M, Shao E, Lin H, Lin Z, Zhu F, Lu G, Lin D. Mao F, et al. Among authors: zhu f. Int J Mol Sci. 2024 Sep 10;25(18):9798. doi: 10.3390/ijms25189798. Int J Mol Sci. 2024. PMID: 39337286 Free PMC article.

8

Sea-ATI unravels novel vocabularies of plant active cistrome.

Wen C, Yuan Z, Zhang X, Chen H, Luo L, Li W, Li T, Ma N, Mao F, Lin D, Lin Z, Lin C, Xu T, Lü P, Lin J, Zhu F. Wen C, et al. Among authors: zhu f. Nucleic Acids Res. 2023 Nov 27;51(21):11568-11583. doi: 10.1093/nar/gkad853. Nucleic Acids Res. 2023. PMID: 37850650 Free PMC article.

9

Limitation of life-sustaining treatments in Asian ICUs: theory versus practice.

Ling L, Li A, Phua J; MOSAICS II Study Group; Asian Critical Care Clinical Trials Group. Ling L, et al. Crit Care. 2025 Jan 6;29(1):9. doi: 10.1186/s13054-024-05241-2. Crit Care. 2025. PMID: 39762907 Free article. No abstract available.

10

Characterization of sulfakinin and its role in larval feeding and molting in Spodoptera frugiperda.

Yu MQ, Linghu JH, Xie HY, Li G, Zhu F, Smagghe G, Gui SH, Liu TX. Yu MQ, et al. Among authors: zhu f. Insect Sci. 2025 Jan 6. doi: 10.1111/1744-7917.13480. Online ahead of print. Insect Sci. 2025. PMID: 39760383

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