Kulczyk AW - Search Results

1

A Robust Single-Particle Cryo-Electron Microscopy (cryo-EM) Processing Workflow with cryoSPARC, RELION, and Scipion.

DiIorio MC, Kulczyk AW. DiIorio MC, et al. Among authors: kulczyk aw. J Vis Exp. 2022 Jan 31;(179). doi: 10.3791/63387. J Vis Exp. 2022. PMID: 35104261

2

Solution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalpha.

Kulczyk AW, Yang JC, Neuhaus D. Kulczyk AW, et al. J Mol Biol. 2004 Aug 13;341(3):723-38. doi: 10.1016/j.jmb.2004.06.035. J Mol Biol. 2004. PMID: 15288782

3

Cryo-EM structure of Shiga toxin 2 in complex with the native ribosomal P-stalk reveals residues involved in the binding interaction.

Kulczyk AW, Sorzano COS, Grela P, Tchórzewski M, Tumer NE, Li XP. Kulczyk AW, et al. J Biol Chem. 2023 Jan;299(1):102795. doi: 10.1016/j.jbc.2022.102795. Epub 2022 Dec 15. J Biol Chem. 2023. PMID: 36528064 Free PMC article.

4

Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.

Kulczyk AW, Moeller A, Meyer P, Sliz P, Richardson CC. Kulczyk AW, et al. Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E1848-E1856. doi: 10.1073/pnas.1701252114. Epub 2017 Feb 21. Proc Natl Acad Sci U S A. 2017. PMID: 28223502 Free PMC article.

5

Inadequate inhibition of host RNA polymerase restricts T7 bacteriophage growth on hosts overexpressing udk.

Qimron U, Kulczyk AW, Hamdan SM, Tabor S, Richardson CC. Qimron U, et al. Among authors: kulczyk aw. Mol Microbiol. 2008 Jan;67(2):448-57. doi: 10.1111/j.1365-2958.2007.06058.x. Epub 2007 Dec 5. Mol Microbiol. 2008. PMID: 18067538 Free article.

6

Direct observation of enzymes replicating DNA using a single-molecule DNA stretching assay.

Kulczyk AW, Tanner NA, Loparo JJ, Richardson CC, van Oijen AM. Kulczyk AW, et al. J Vis Exp. 2010 Mar 23;(37):1689. doi: 10.3791/1689. J Vis Exp. 2010. PMID: 20332766 Free PMC article.

7

Conformational dynamics of bacteriophage T7 DNA polymerase and its processivity factor, Escherichia coli thioredoxin.

Akabayov B, Akabayov SR, Lee SJ, Tabor S, Kulczyk AW, Richardson CC. Akabayov B, et al. Among authors: kulczyk aw. Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15033-8. doi: 10.1073/pnas.1010141107. Epub 2010 Aug 9. Proc Natl Acad Sci U S A. 2010. PMID: 20696935 Free PMC article.

8

Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange.

Loparo JJ, Kulczyk AW, Richardson CC, van Oijen AM. Loparo JJ, et al. Among authors: kulczyk aw. Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3584-9. doi: 10.1073/pnas.1018824108. Epub 2011 Jan 18. Proc Natl Acad Sci U S A. 2011. PMID: 21245349 Free PMC article.

9

Pyrovanadolysis, a pyrophosphorolysis-like reaction mediated by pyrovanadate, Mn2+, and DNA polymerase of bacteriophage T7.

Akabayov B, Kulczyk AW, Akabayov SR, Theile C, McLaughlin LW, Beauchamp B, van Oijen AM, Richardson CC. Akabayov B, et al. Among authors: kulczyk aw. J Biol Chem. 2011 Aug 19;286(33):29146-29157. doi: 10.1074/jbc.M111.250944. Epub 2011 Jun 21. J Biol Chem. 2011. PMID: 21697085 Free PMC article.

10

Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7.

Satapathy AK, Kulczyk AW, Ghosh S, van Oijen AM, Richardson CC. Satapathy AK, et al. Among authors: kulczyk aw. J Biol Chem. 2011 Sep 30;286(39):34468-78. doi: 10.1074/jbc.M111.283796. Epub 2011 Aug 12. J Biol Chem. 2011. PMID: 21840995 Free PMC article.

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