Petzold L - Search Results

1

Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods.

Jiang R, Singh P, Wrede F, Hellander A, Petzold L. Jiang R, et al. Among authors: petzold l. PLoS Comput Biol. 2022 Jan 31;18(1):e1009830. doi: 10.1371/journal.pcbi.1009830. eCollection 2022 Jan. PLoS Comput Biol. 2022. PMID: 35100263 Free PMC article.

2

Protosequences in human cortical organoids model intrinsic states in the developing cortex.

van der Molen T, Spaeth A, Chini M, Bartram J, Dendukuri A, Zhang Z, Bhaskaran-Nair K, Blauvelt LJ, Petzold LR, Hansma PK, Teodorescu M, Hierlemann A, Hengen KB, Hanganu-Opatz IL, Kosik KS, Sharf T. van der Molen T, et al. Among authors: petzold lr. bioRxiv [Preprint]. 2023 Dec 30:2023.12.29.573646. doi: 10.1101/2023.12.29.573646. bioRxiv. 2023. PMID: 38234832 Free PMC article. Preprint.

3

Reaction-diffusion master equation in the microscopic limit.

Hellander S, Hellander A, Petzold L. Hellander S, et al. Among authors: petzold l. Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr;85(4 Pt 1):042901. doi: 10.1103/PhysRevE.85.042901. Epub 2012 Apr 3. Phys Rev E Stat Nonlin Soft Matter Phys. 2012. PMID: 22680526

4

Perspective: Stochastic algorithms for chemical kinetics.

Gillespie DT, Hellander A, Petzold LR. Gillespie DT, et al. J Chem Phys. 2013 May 7;138(17):170901. doi: 10.1063/1.4801941. J Chem Phys. 2013. PMID: 23656106 Free PMC article.

5

The role of dimerisation and nuclear transport in the Hes1 gene regulatory network.

Sturrock M, Hellander A, Aldakheel S, Petzold L, Chaplain MA. Sturrock M, et al. Among authors: petzold l. Bull Math Biol. 2014 Apr;76(4):766-98. doi: 10.1007/s11538-013-9842-5. Epub 2013 May 18. Bull Math Biol. 2014. PMID: 23686434 Free PMC article.

6

Reaction rates for mesoscopic reaction-diffusion kinetics.

Hellander S, Hellander A, Petzold L. Hellander S, et al. Among authors: petzold l. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Feb;91(2):023312. doi: 10.1103/PhysRevE.91.023312. Epub 2015 Feb 23. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 25768640 Free PMC article.

7

Accuracy of the Michaelis-Menten approximation when analysing effects of molecular noise.

Lawson MJ, Petzold L, Hellander A. Lawson MJ, et al. Among authors: petzold l. J R Soc Interface. 2015 May 6;12(106):20150054. doi: 10.1098/rsif.2015.0054. J R Soc Interface. 2015. PMID: 25833240 Free PMC article.

8

Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splitting.

Hellander A, Lawson MJ, Drawert B, Petzold L. Hellander A, et al. Among authors: petzold l. J Comput Phys. 2014 Jun 1;266:89-100. doi: 10.1016/j.jcp.2014.02.004. J Comput Phys. 2014. PMID: 26865735 Free PMC article.

9

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.

Drawert B, Hellander A, Bales B, Banerjee D, Bellesia G, Daigle BJ Jr, Douglas G, Gu M, Gupta A, Hellander S, Horuk C, Nath D, Takkar A, Wu S, Lötstedt P, Krintz C, Petzold LR. Drawert B, et al. PLoS Comput Biol. 2016 Dec 8;12(12):e1005220. doi: 10.1371/journal.pcbi.1005220. eCollection 2016 Dec. PLoS Comput Biol. 2016. PMID: 27930676 Free PMC article.

10

MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDME.

Drawert B, Trogdon M, Toor S, Petzold L, Hellander A. Drawert B, et al. Among authors: petzold l. SIAM J Sci Comput. 2016;38(3):C179-C202. doi: 10.1137/15M1014784. Epub 2016 Jun 1. SIAM J Sci Comput. 2016. PMID: 28190948 Free PMC article.

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