Kuksa PP - Search Results

1

Alzheimer's Disease Variant Portal: A Catalog of Genetic Findings for Alzheimer's Disease.

Kuksa PP, Liu CL, Fu W, Qu L, Zhao Y, Katanic Z, Clark K, Kuzma AB, Ho PC, Tzeng KT, Valladares O, Chou SY, Naj AC, Schellenberg GD, Wang LS, Leung YY. Kuksa PP, et al. J Alzheimers Dis. 2022;86(1):461-477. doi: 10.3233/JAD-215055. J Alzheimers Dis. 2022. PMID: 35068457 Free PMC article.

2

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.

Hwang YC, Lin CF, Valladares O, Malamon J, Kuksa PP, Zheng Q, Gregory BD, Wang LS. Hwang YC, et al. Among authors: kuksa pp. Bioinformatics. 2015 Apr 15;31(8):1290-2. doi: 10.1093/bioinformatics/btu801. Epub 2014 Dec 4. Bioinformatics. 2015. PMID: 25480377 Free PMC article.

3

DASHR: database of small human noncoding RNAs.

Leung YY, Kuksa PP, Amlie-Wolf A, Valladares O, Ungar LH, Kannan S, Gregory BD, Wang LS. Leung YY, et al. Among authors: kuksa pp. Nucleic Acids Res. 2016 Jan 4;44(D1):D216-22. doi: 10.1093/nar/gkv1188. Epub 2015 Nov 8. Nucleic Acids Res. 2016. PMID: 26553799 Free PMC article.

4

Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis.

Vandivier LE, Campos R, Kuksa PP, Silverman IM, Wang LS, Gregory BD. Vandivier LE, et al. Among authors: kuksa pp. Plant Cell. 2015 Nov;27(11):3024-37. doi: 10.1105/tpc.15.00591. Epub 2015 Nov 11. Plant Cell. 2015. PMID: 26561561 Free PMC article.

5

In Silico Identification of RNA Modifications from High-Throughput Sequencing Data Using HAMR.

Kuksa PP, Leung YY, Vandivier LE, Anderson Z, Gregory BD, Wang LS. Kuksa PP, et al. Methods Mol Biol. 2017;1562:211-229. doi: 10.1007/978-1-4939-6807-7_14. Methods Mol Biol. 2017. PMID: 28349463 Free PMC article.

6

SPAR: small RNA-seq portal for analysis of sequencing experiments.

Kuksa PP, Amlie-Wolf A, Katanic Ž, Valladares O, Wang LS, Leung YY. Kuksa PP, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W36-W42. doi: 10.1093/nar/gky330. Nucleic Acids Res. 2018. PMID: 29733404 Free PMC article.

7

INFERNO: inferring the molecular mechanisms of noncoding genetic variants.

Amlie-Wolf A, Tang M, Mlynarski EE, Kuksa PP, Valladares O, Katanic Z, Tsuang D, Brown CD, Schellenberg GD, Wang LS. Amlie-Wolf A, et al. Among authors: kuksa pp. Nucleic Acids Res. 2018 Sep 28;46(17):8740-8753. doi: 10.1093/nar/gky686. Nucleic Acids Res. 2018. PMID: 30113658 Free PMC article.

8

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.

Kuksa PP, Amlie-Wolf A, Katanić Ž, Valladares O, Wang LS, Leung YY. Kuksa PP, et al. Bioinformatics. 2019 Mar 15;35(6):1033-1039. doi: 10.1093/bioinformatics/bty709. Bioinformatics. 2019. PMID: 30668832 Free PMC article.

9

HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions.

Kuksa PP, Amlie-Wolf A, Hwang YC, Valladares O, Gregory BD, Wang LS. Kuksa PP, et al. NAR Genom Bioinform. 2020 Jun;2(2):lqaa022. doi: 10.1093/nargab/lqaa022. Epub 2020 Mar 31. NAR Genom Bioinform. 2020. PMID: 32270138 Free PMC article.

10

SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.

Kuksa PP, Lee CY, Amlie-Wolf A, Gangadharan P, Mlynarski EE, Chou YF, Lin HJ, Issen H, Greenfest-Allen E, Valladares O, Leung YY, Wang LS. Kuksa PP, et al. Bioinformatics. 2020 Jun 1;36(12):3879-3881. doi: 10.1093/bioinformatics/btaa246. Bioinformatics. 2020. PMID: 32330239 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

30 results

Search Page

Filters