Chen S - Search Results

1

AlphaFold2-aware protein-DNA binding site prediction using graph transformer.

Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yang Y. Yuan Q, et al. Among authors: chen s. Brief Bioinform. 2022 Mar 10;23(2):bbab564. doi: 10.1093/bib/bbab564. Brief Bioinform. 2022. PMID: 35039821

2

To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map.

Chen S, Sun Z, Lin L, Liu Z, Liu X, Chong Y, Lu Y, Zhao H, Yang Y. Chen S, et al. J Chem Inf Model. 2020 Jan 27;60(1):391-399. doi: 10.1021/acs.jcim.9b00438. Epub 2019 Dec 20. J Chem Inf Model. 2020. PMID: 31800243

3

Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning.

Yuan Q, Chen S, Wang Y, Zhao H, Yang Y. Yuan Q, et al. Among authors: chen s. Brief Bioinform. 2022 Nov 19;23(6):bbac444. doi: 10.1093/bib/bbac444. Brief Bioinform. 2022. PMID: 36274238

4

Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model.

Zeng Y, Wei Z, Yuan Q, Chen S, Yu W, Lu Y, Gao J, Yang Y. Zeng Y, et al. Among authors: chen s. Bioinformatics. 2023 Apr 3;39(4):btad187. doi: 10.1093/bioinformatics/btad187. Bioinformatics. 2023. PMID: 37039829 Free PMC article.

5

Fast and accurate protein intrinsic disorder prediction by using a pretrained language model.

Song Y, Yuan Q, Chen S, Chen K, Zhou Y, Yang Y. Song Y, et al. Among authors: chen k, chen s. Brief Bioinform. 2023 Jul 20;24(4):bbad173. doi: 10.1093/bib/bbad173. Brief Bioinform. 2023. PMID: 37204193

6

Predicting the effects of mutations on protein solubility using graph convolution network and protein language model representation.

Wang J, Chen S, Yuan Q, Chen J, Li D, Wang L, Yang Y. Wang J, et al. Among authors: chen j, chen s. J Comput Chem. 2024 Mar 30;45(8):436-445. doi: 10.1002/jcc.27249. Epub 2023 Nov 7. J Comput Chem. 2024. PMID: 37933773

7

DiffDec: Structure-Aware Scaffold Decoration with an End-to-End Diffusion Model.

Xie J, Chen S, Lei J, Yang Y. Xie J, et al. Among authors: chen s. J Chem Inf Model. 2024 Apr 8;64(7):2554-2564. doi: 10.1021/acs.jcim.3c01466. Epub 2024 Jan 24. J Chem Inf Model. 2024. PMID: 38267393

8

Structure-aware dual-target drug design through collaborative learning of pharmacophore combination and molecular simulation.

Chen S, Xie J, Ye R, Xu DD, Yang Y. Chen S, et al. Chem Sci. 2024 Jun 13;15(27):10366-10380. doi: 10.1039/d4sc00094c. eCollection 2024 Jul 10. Chem Sci. 2024. PMID: 38994407 Free PMC article.

9

Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures.

Song Y, Yuan Q, Chen S, Zeng Y, Zhao H, Yang Y. Song Y, et al. Among authors: chen s. Nat Commun. 2024 Sep 18;15(1):8180. doi: 10.1038/s41467-024-52533-w. Nat Commun. 2024. PMID: 39294165 Free PMC article.

10

Protein complex structure modeling by cross-modal alignment between cryo-EM maps and protein sequences.

Chen S, Zhang S, Fang X, Lin L, Zhao H, Yang Y. Chen S, et al. Nat Commun. 2024 Oct 11;15(1):8808. doi: 10.1038/s41467-024-53116-5. Nat Commun. 2024. PMID: 39394203 Free PMC article.

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