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Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
Hoopes G, Meng X, Hamilton JP, Achakkagari SR, de Alves Freitas Guesdes F, Bolger ME, Coombs JJ, Esselink D, Kaiser NR, Kodde L, Kyriakidou M, Lavrijssen B, van Lieshout N, Shereda R, Tuttle HK, Vaillancourt B, Wood JC, de Boer JM, Bornowski N, Bourke P, Douches D, van Eck HJ, Ellis D, Feldman MJ, Gardner KM, Hopman JCP, Jiang J, De Jong WS, Kuhl JC, Novy RG, Oome S, Sathuvalli V, Tan EH, Ursum RA, Vales MI, Vining K, Visser RGF, Vossen J, Yencho GC, Anglin NL, Bachem CWB, Endelman JB, Shannon LM, Strömvik MV, Tai HH, Usadel B, Buell CR, Finkers R. Hoopes G, et al. Among authors: usadel b. Mol Plant. 2022 Mar 7;15(3):520-536. doi: 10.1016/j.molp.2022.01.003. Epub 2022 Jan 10. Mol Plant. 2022. PMID: 35026436 Free article.
Plant genome sequencing - applications for crop improvement.
Bolger ME, Weisshaar B, Scholz U, Stein N, Usadel B, Mayer KF. Bolger ME, et al. Among authors: usadel b. Curr Opin Biotechnol. 2014 Apr;26:31-7. doi: 10.1016/j.copbio.2013.08.019. Epub 2013 Sep 21. Curr Opin Biotechnol. 2014. PMID: 24679255 Review.
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.
Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B. Schmidt MH, et al. Among authors: usadel b. Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521. Epub 2017 Oct 12. Plant Cell. 2017. PMID: 29025960 Free PMC article.
Computational aspects underlying genome to phenome analysis in plants.
Bolger AM, Poorter H, Dumschott K, Bolger ME, Arend D, Osorio S, Gundlach H, Mayer KFX, Lange M, Scholz U, Usadel B. Bolger AM, et al. Among authors: usadel b. Plant J. 2019 Jan;97(1):182-198. doi: 10.1111/tpj.14179. Plant J. 2019. PMID: 30500991 Free PMC article. Review.
191 results