Rappoport N - Search Results

1

ProteinBERT: a universal deep-learning model of protein sequence and function.

Brandes N, Ofer D, Peleg Y, Rappoport N, Linial M. Brandes N, et al. Among authors: rappoport n. Bioinformatics. 2022 Apr 12;38(8):2102-2110. doi: 10.1093/bioinformatics/btac020. Bioinformatics. 2022. PMID: 35020807 Free PMC article.

2

PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations.

Rappoport N, Fromer M, Schweiger R, Linial M. Rappoport N, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W84-9. doi: 10.1093/nar/gkq320. Epub 2010 May 5. Nucleic Acids Res. 2010. PMID: 20444873 Free PMC article.

3

ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.

Rappoport N, Karsenty S, Stern A, Linial N, Linial M. Rappoport N, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D313-20. doi: 10.1093/nar/gkr1027. Epub 2011 Nov 25. Nucleic Acids Res. 2012. PMID: 22121228 Free PMC article.

4

Viral proteins acquired from a host converge to simplified domain architectures.

Rappoport N, Linial M. Rappoport N, et al. PLoS Comput Biol. 2012 Feb;8(2):e1002364. doi: 10.1371/journal.pcbi.1002364. Epub 2012 Feb 2. PLoS Comput Biol. 2012. PMID: 22319434 Free PMC article.

5

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex.

Rappoport N, Linial M. Rappoport N, et al. BMC Bioinformatics. 2013;14 Suppl 3(Suppl 3):S11. doi: 10.1186/1471-2105-14-S3-S11. Epub 2013 Feb 28. BMC Bioinformatics. 2013. PMID: 23514195 Free PMC article.

6

ProtoNet: charting the expanding universe of protein sequences.

Rappoport N, Linial N, Linial M. Rappoport N, et al. Nat Biotechnol. 2013 Apr;31(4):290-2. doi: 10.1038/nbt.2553. Nat Biotechnol. 2013. PMID: 23563419 No abstract available.

7

NeuroPID: a classifier of neuropeptide precursors.

Karsenty S, Rappoport N, Ofer D, Zair A, Linial M. Karsenty S, et al. Among authors: rappoport n. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W182-6. doi: 10.1093/nar/gku363. Epub 2014 May 3. Nucleic Acids Res. 2014. PMID: 24792159 Free PMC article.

8

Entropy-driven partitioning of the hierarchical protein space.

Rappoport N, Stern A, Linial N, Linial M. Rappoport N, et al. Bioinformatics. 2014 Sep 1;30(17):i624-30. doi: 10.1093/bioinformatics/btu478. Bioinformatics. 2014. PMID: 25161256 Free PMC article.

9

ProtoBug: functional families from the complete proteomes of insects.

Rappoport N, Linial M. Rappoport N, et al. Database (Oxford). 2015 Apr 24;2015:bau122. doi: 10.1093/database/bau122. Print 2015. Database (Oxford). 2015. PMID: 25911153 Free PMC article.

10

Trends in genome dynamics among major orders of insects revealed through variations in protein families.

Rappoport N, Linial M. Rappoport N, et al. BMC Genomics. 2015 Aug 7;16(1):583. doi: 10.1186/s12864-015-1771-2. BMC Genomics. 2015. PMID: 26251035 Free PMC article.

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