Torbett BE - Search Results

1

Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.

Wang S, Sotcheff SL, Gallardo CM, Jaworski E, Torbett BE, Routh AL. Wang S, et al. Among authors: torbett be. Nucleic Acids Res. 2022 Apr 22;50(7):e41. doi: 10.1093/nar/gkab1259. Nucleic Acids Res. 2022. PMID: 35018461 Free PMC article.

2

CoVaMa: Co-Variation Mapper for disequilibrium analysis of mutant loci in viral populations using next-generation sequence data.

Routh A, Chang MW, Okulicz JF, Johnson JE, Torbett BE. Routh A, et al. Among authors: torbett be. Methods. 2015 Dec;91:40-47. doi: 10.1016/j.ymeth.2015.09.021. Epub 2015 Sep 25. Methods. 2015. PMID: 26408523 Free PMC article.

3

Sequencing and Structure Probing of Long RNAs Using MarathonRT: A Next-Generation Reverse Transcriptase.

Guo LT, Adams RL, Wan H, Huston NC, Potapova O, Olson S, Gallardo CM, Graveley BR, Torbett BE, Pyle AM. Guo LT, et al. Among authors: torbett be. J Mol Biol. 2020 May 1;432(10):3338-3352. doi: 10.1016/j.jmb.2020.03.022. Epub 2020 Apr 4. J Mol Biol. 2020. PMID: 32259542 Free PMC article.

4

MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.

Gallardo CM, Wang S, Montiel-Garcia DJ, Little SJ, Smith DM, Routh AL, Torbett BE. Gallardo CM, et al. Among authors: torbett be. Nucleic Acids Res. 2021 Jul 9;49(12):e70. doi: 10.1093/nar/gkab231. Nucleic Acids Res. 2021. PMID: 33849057 Free PMC article.

5

Selective ablation of 3' RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts.

Gallardo CM, Nguyen AT, Routh AL, Torbett BE. Gallardo CM, et al. Among authors: torbett be. Nucleic Acids Res. 2022 Sep 23;50(17):e98. doi: 10.1093/nar/gkac516. Nucleic Acids Res. 2022. PMID: 35736235 Free PMC article.

6

ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids.

Sotcheff S, Zhou Y, Yeung J, Sun Y, Johnson JE, Torbett BE, Routh AL. Sotcheff S, et al. Among authors: torbett be. Gigascience. 2023 Mar 20;12:giad009. doi: 10.1093/gigascience/giad009. Epub 2023 Mar 20. Gigascience. 2023. PMID: 36939008 Free PMC article.

7

Rapid deep sequencing of patient-derived HIV with ion semiconductor technology.

Chang MW, Oliveira G, Yuan J, Okulicz JF, Levy S, Torbett BE. Chang MW, et al. Among authors: torbett be. J Virol Methods. 2013 Apr;189(1):232-4. doi: 10.1016/j.jviromet.2013.01.019. Epub 2013 Feb 4. J Virol Methods. 2013. PMID: 23384677 Free PMC article.

8

Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease.

Flynn WF, Chang MW, Tan Z, Oliveira G, Yuan J, Okulicz JF, Torbett BE, Levy RM. Flynn WF, et al. Among authors: torbett be. PLoS Comput Biol. 2015 Apr 20;11(4):e1004249. doi: 10.1371/journal.pcbi.1004249. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25894830 Free PMC article.

9

CCR5 Disruption in Induced Pluripotent Stem Cells Using CRISPR/Cas9 Provides Selective Resistance of Immune Cells to CCR5-tropic HIV-1 Virus.

Kang H, Minder P, Park MA, Mesquitta WT, Torbett BE, Slukvin II. Kang H, et al. Among authors: torbett be. Mol Ther Nucleic Acids. 2015 Dec 15;4:e268. doi: 10.1038/mtna.2015.42. Mol Ther Nucleic Acids. 2015. PMID: 26670276 Free article.

10

Viral evolution in response to the broad-based retroviral protease inhibitor TL-3.

Bühler B, Lin YC, Morris G, Olson AJ, Wong CH, Richman DD, Elder JH, Torbett BE. Bühler B, et al. Among authors: torbett be. J Virol. 2001 Oct;75(19):9502-8. doi: 10.1128/JVI.75.19.9502-9508.2001. J Virol. 2001. PMID: 11533212 Free PMC article.

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