Liang S - Search Results

1

Sensei: how many samples to tell a change in cell type abundance?

Liang S, Willis J, Dou J, Mohanty V, Huang Y, Vilar E, Chen K. Liang S, et al. BMC Bioinformatics. 2022 Jan 4;23(1):2. doi: 10.1186/s12859-021-04526-5. BMC Bioinformatics. 2022. PMID: 34983369 Free PMC article.

2

SCMarker: Ab initio marker selection for single cell transcriptome profiling.

Wang F, Liang S, Kumar T, Navin N, Chen K. Wang F, et al. Among authors: liang s. PLoS Comput Biol. 2019 Oct 28;15(10):e1007445. doi: 10.1371/journal.pcbi.1007445. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31658262 Free PMC article.

3

Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.

Liang Q, Dharmat R, Owen L, Shakoor A, Li Y, Kim S, Vitale A, Kim I, Morgan D, Liang S, Wu N, Chen K, DeAngelis MM, Chen R. Liang Q, et al. Among authors: liang s. Nat Commun. 2019 Dec 17;10(1):5743. doi: 10.1038/s41467-019-12917-9. Nat Commun. 2019. PMID: 31848347 Free PMC article.

4

Latent periodic process inference from single-cell RNA-seq data.

Liang S, Wang F, Han J, Chen K. Liang S, et al. Nat Commun. 2020 Mar 18;11(1):1441. doi: 10.1038/s41467-020-15295-9. Nat Commun. 2020. PMID: 32188848 Free PMC article.

5

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data.

Liang S, Dou J, Iqbal R, Chen K. Liang S, et al. bioRxiv [Preprint]. 2020 Oct 9:2020.10.08.332080. doi: 10.1101/2020.10.08.332080. bioRxiv. 2020. Update in: Commun Biol. 2024 Mar 14;7(1):326. doi: 10.1038/s42003-024-05988-y PMID: 33052339 Free PMC article. Updated. Preprint.

6

MEDALT: single-cell copy number lineage tracing enabling gene discovery.

Wang F, Wang Q, Mohanty V, Liang S, Dou J, Han J, Minussi DC, Gao R, Ding L, Navin N, Chen K. Wang F, et al. Among authors: liang s. Genome Biol. 2021 Feb 23;22(1):70. doi: 10.1186/s13059-021-02291-5. Genome Biol. 2021. PMID: 33622385 Free PMC article.

7

Extended live-cell barcoding approach for multiplexed mass cytometry.

Muftuoglu M, Li L, Liang S, Mak D, Lin AJ, Fang J, Burks JK, Chen K, Andreeff M. Muftuoglu M, et al. Among authors: liang s. Sci Rep. 2021 Jun 11;11(1):12388. doi: 10.1038/s41598-021-91816-w. Sci Rep. 2021. PMID: 34117319 Free PMC article.

8

Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data.

Liang S, Liang Q, Chen R, Chen K. Liang S, et al. Among authors: liang q. IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2072-2079. doi: 10.1109/TCBB.2021.3094650. Epub 2021 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 34232885 Free PMC article.

9

Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes.

Abbas HA, Mohanty V, Wang R, Huang Y, Liang S, Wang F, Zhang J, Qiu Y, Hu CW, Qutub AA, Dail M, Bolen CR, Daver N, Konopleva M, Futreal A, Chen K, Wang L, Kornblau SM. Abbas HA, et al. Among authors: liang s. Front Oncol. 2021 Aug 4;11:705627. doi: 10.3389/fonc.2021.705627. eCollection 2021. Front Oncol. 2021. PMID: 34422660 Free PMC article.

10

In-depth analysis of SARS-CoV-2-specific T cells reveals diverse differentiation hierarchies in vaccinated individuals.

Li L, Muftuoglu M, Liang S, Basyal M, Lv J, Akdogan ME, Chen K, Andreeff M, Flowers CR, Parmar S. Li L, et al. Among authors: liang s. JCI Insight. 2022 Apr 8;7(7):e156559. doi: 10.1172/jci.insight.156559. JCI Insight. 2022. PMID: 35230977 Free PMC article.

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