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Sensei: how many samples to tell a change in cell type abundance?
Liang S, Willis J, Dou J, Mohanty V, Huang Y, Vilar E, Chen K. Liang S, et al. Among authors: chen k. BMC Bioinformatics. 2022 Jan 4;23(1):2. doi: 10.1186/s12859-021-04526-5. BMC Bioinformatics. 2022. PMID: 34983369 Free PMC article.
Integrated transcriptomic-genomic tool Texomer profiles cancer tissues.
Wang F, Zhang S, Kim TB, Lin YY, Iqbal R, Wang Z, Mohanty V, Sircar K, Karam JA, Wendl MC, Meric-Bernstam F, Weinstein JN, Ding L, Mills GB, Chen K. Wang F, et al. Among authors: chen k. Nat Methods. 2019 May;16(5):401-404. doi: 10.1038/s41592-019-0388-9. Epub 2019 Apr 15. Nat Methods. 2019. PMID: 30988467 Free PMC article.
Targeting a cytokine checkpoint enhances the fitness of armored cord blood CAR-NK cells.
Daher M, Basar R, Gokdemir E, Baran N, Uprety N, Nunez Cortes AK, Mendt M, Kerbauy LN, Banerjee PP, Shanley M, Imahashi N, Li L, Lim FLWI, Fathi M, Rezvan A, Mohanty V, Shen Y, Shaim H, Lu J, Ozcan G, Ensley E, Kaplan M, Nandivada V, Bdiwi M, Acharya S, Xi Y, Wan X, Mak D, Liu E, Jiang XR, Ang S, Muniz-Feliciano L, Li Y, Wang J, Kordasti S, Petrov N, Varadarajan N, Marin D, Brunetti L, Skinner RJ, Lyu S, Silva L, Turk R, Schubert MS, Rettig GR, McNeill MS, Kurgan G, Behlke MA, Li H, Fowlkes NW, Chen K, Konopleva M, Champlin RE, Shpall EJ, Rezvani K. Daher M, et al. Among authors: chen k. Blood. 2021 Feb 4;137(5):624-636. doi: 10.1182/blood.2020007748. Blood. 2021. PMID: 32902645 Free PMC article.
Ab initio spillover compensation in mass cytometry data.
Miao Q, Wang F, Dou J, Iqbal R, Muftuoglu M, Basar R, Li L, Rezvani K, Chen K. Miao Q, et al. Among authors: chen k. Cytometry A. 2021 Sep;99(9):899-909. doi: 10.1002/cyto.a.24298. Epub 2020 Dec 31. Cytometry A. 2021. PMID: 33342071 Free PMC article.
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