Strbenac D - Search Results

1

Oral Squamous Cell Carcinoma in Young Patients Show Higher Rates of EGFR Amplification: Implications for Novel Personalized Therapy.

Satgunaseelan L, Porazinski S, Strbenac D, Istadi A, Willet C, Chew T, Sadsad R, Palme CE, Lee JH, Boyer M, Yang JYH, Clark JR, Pajic M, Gupta R. Satgunaseelan L, et al. Among authors: strbenac d. Front Oncol. 2021 Nov 29;11:750852. doi: 10.3389/fonc.2021.750852. eCollection 2021. Front Oncol. 2021. PMID: 34912708 Free PMC article.

2

Detection and classification of peaks in 5' cap RNA sequencing data.

Strbenac D, Armstrong NJ, Yang JY. Strbenac D, et al. BMC Genomics. 2013;14 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2164-14-S5-S9. Epub 2013 Oct 16. BMC Genomics. 2013. PMID: 24564843 Free PMC article.

3

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.

Strbenac D, Mann GJ, Ormerod JT, Yang JY. Strbenac D, et al. Bioinformatics. 2015 Jun 1;31(11):1851-3. doi: 10.1093/bioinformatics/btv066. Epub 2015 Feb 1. Bioinformatics. 2015. PMID: 25644269

4

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Strbenac D, Mann GJ, Yang JY, Ormerod JT. Strbenac D, et al. Nucleic Acids Res. 2016 Jul 27;44(13):e119. doi: 10.1093/nar/gkw444. Epub 2016 May 17. Nucleic Acids Res. 2016. PMID: 27190235 Free PMC article.

5

Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

Strbenac D, Zhong L, Raftery MJ, Wang P, Wilson SR, Armstrong NJ, Yang JYH. Strbenac D, et al. J Proteome Res. 2017 Jul 7;16(7):2359-2369. doi: 10.1021/acs.jproteome.6b00882. Epub 2017 Jun 5. J Proteome Res. 2017. PMID: 28580786

6

DCARS: differential correlation across ranked samples.

Ghazanfar S, Strbenac D, Ormerod JT, Yang JYH, Patrick E. Ghazanfar S, et al. Among authors: strbenac d. Bioinformatics. 2019 Mar 1;35(5):823-829. doi: 10.1093/bioinformatics/bty698. Bioinformatics. 2019. PMID: 30102408

7

Melanoma Explorer: a web application to allow easy reanalysis of publicly available and clinically annotated melanoma omics data sets.

Strbenac D, Wang K, Wang X, Dong J, Mann GJ, Mueller S, Yang JYH. Strbenac D, et al. Melanoma Res. 2019 Jun;29(3):342-344. doi: 10.1097/CMR.0000000000000533. Melanoma Res. 2019. PMID: 31026248

8

Evaluating stably expressed genes in single cells.

Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P. Lin Y, et al. Among authors: strbenac d. Gigascience. 2019 Sep 1;8(9):giz106. doi: 10.1093/gigascience/giz106. Gigascience. 2019. PMID: 31531674 Free PMC article.

9

Analysis of the Whole-Exome Sequencing of Tumor and Circulating Tumor DNA in Metastatic Melanoma.

Diefenbach RJ, Lee JH, Strbenac D, Yang JYH, Menzies AM, Carlino MS, Long GV, Spillane AJ, Stretch JR, Saw RPM, Thompson JF, Ch'ng S, Scolyer RA, Kefford RF, Rizos H. Diefenbach RJ, et al. Among authors: strbenac d. Cancers (Basel). 2019 Nov 29;11(12):1905. doi: 10.3390/cancers11121905. Cancers (Basel). 2019. PMID: 31795494 Free PMC article.

10

Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition.

Lee JH, Shklovskaya E, Lim SY, Carlino MS, Menzies AM, Stewart A, Pedersen B, Irvine M, Alavi S, Yang JYH, Strbenac D, Saw RPM, Thompson JF, Wilmott JS, Scolyer RA, Long GV, Kefford RF, Rizos H. Lee JH, et al. Among authors: strbenac d. Nat Commun. 2020 Apr 20;11(1):1897. doi: 10.1038/s41467-020-15726-7. Nat Commun. 2020. PMID: 32312968 Free PMC article.

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