Welch L - Search Results

1

Cell-type specialization is encoded by specific chromatin topologies.

Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: welch l. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.

2

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana.

Li Y, Mullin M, Zhang Y, Drews F, Welch LR, Showalter AM. Li Y, et al. Plants (Basel). 2020 Dec 10;9(12):1751. doi: 10.3390/plants9121751. Plants (Basel). 2020. PMID: 33322028 Free PMC article.

3

Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.

Beagrie RA, Thieme CJ, Annunziatella C, Baugher C, Zhang Y, Schueler M, Kukalev A, Kempfer R, Chiariello AM, Bianco S, Li Y, Davis T, Scialdone A, Welch LR, Nicodemi M, Pombo A. Beagrie RA, et al. Nat Methods. 2023 Jul;20(7):1037-1047. doi: 10.1038/s41592-023-01903-1. Epub 2023 Jun 19. Nat Methods. 2023. PMID: 37336949 Free PMC article.

4

Set cover-based methods for motif selection.

Li Y, Liu Y, Juedes D, Drews F, Bunescu R, Welch L. Li Y, et al. Among authors: welch l. Bioinformatics. 2020 Feb 15;36(4):1044-1051. doi: 10.1093/bioinformatics/btz697. Bioinformatics. 2020. PMID: 31665223 Free PMC article.

5

Sex chromosome evolution in parasitic nematodes of humans.

Foster JM, Grote A, Mattick J, Tracey A, Tsai YC, Chung M, Cotton JA, Clark TA, Geber A, Holroyd N, Korlach J, Li Y, Libro S, Lustigman S, Michalski ML, Paulini M, Rogers MB, Teigen L, Twaddle A, Welch L, Berriman M, Dunning Hotopp JC, Ghedin E. Foster JM, et al. Among authors: welch l. Nat Commun. 2020 Apr 23;11(1):1964. doi: 10.1038/s41467-020-15654-6. Nat Commun. 2020. PMID: 32327641 Free PMC article.

6

Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer.

Li Y, Jaiswal SK, Kaur R, Alsaadi D, Liang X, Drews F, DeLoia JA, Krivak T, Petrykowska HM, Gotea V, Welch L, Elnitski L. Li Y, et al. Among authors: welch l. BMC Cancer. 2021 Jul 3;21(1):768. doi: 10.1186/s12885-021-08276-8. BMC Cancer. 2021. PMID: 34215221 Free PMC article.

7

A concept for ab initio prediction of cis-regulatory modules.

Ecker K, Welch L. Ecker K, et al. Among authors: welch l. In Silico Biol. 2009;9(5-6):285-306. doi: 10.3233/ISB-2009-0407. In Silico Biol. 2009. PMID: 22430433

8

The SiteSeeker motif discovery tool.

Ecker K, Lichtenberg J, Welch L. Ecker K, et al. Among authors: welch l. In Silico Biol. 2009;9(1-2):11-22. In Silico Biol. 2009. PMID: 19537158

9

The word landscape of the non-coding segments of the Arabidopsis thaliana genome.

Lichtenberg J, Yilmaz A, Welch JD, Kurz K, Liang X, Drews F, Ecker K, Lee SS, Geisler M, Grotewold E, Welch LR. Lichtenberg J, et al. BMC Genomics. 2009 Oct 8;10:463. doi: 10.1186/1471-2164-10-463. BMC Genomics. 2009. PMID: 19814816 Free PMC article.

10

Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting.

Grote A, Li Y, Liu C, Voronin D, Geber A, Lustigman S, Unnasch TR, Welch L, Ghedin E. Grote A, et al. Among authors: welch l. PLoS Negl Trop Dis. 2020 Jun 23;14(6):e0008275. doi: 10.1371/journal.pntd.0008275. eCollection 2020 Jun. PLoS Negl Trop Dis. 2020. PMID: 32574217 Free PMC article.

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