Lamoureux C - Search Results

1

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius.

Chauhan SM, Poudel S, Rychel K, Lamoureux C, Yoo R, Al Bulushi T, Yuan Y, Palsson BO, Sastry AV. Chauhan SM, et al. Among authors: lamoureux c. Front Microbiol. 2021 Oct 27;12:753521. doi: 10.3389/fmicb.2021.753521. eCollection 2021. Front Microbiol. 2021. PMID: 34777307 Free PMC article.

2

The Bitome: digitized genomic features reveal fundamental genome organization.

Lamoureux CR, Choudhary KS, King ZA, Sandberg TE, Gao Y, Sastry AV, Phaneuf PV, Choe D, Cho BK, Palsson BO. Lamoureux CR, et al. Nucleic Acids Res. 2020 Oct 9;48(18):10157-10163. doi: 10.1093/nar/gkaa774. Nucleic Acids Res. 2020. PMID: 32976587 Free PMC article.

3

Optimal dimensionality selection for independent component analysis of transcriptomic data.

McConn JL, Lamoureux CR, Poudel S, Palsson BO, Sastry AV. McConn JL, et al. BMC Bioinformatics. 2021 Dec 8;22(1):584. doi: 10.1186/s12859-021-04497-7. BMC Bioinformatics. 2021. PMID: 34879815 Free PMC article.

4

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection.

Yoo R, Rychel K, Poudel S, Al-Bulushi T, Yuan Y, Chauhan S, Lamoureux C, Palsson BO, Sastry A. Yoo R, et al. Among authors: lamoureux c. mSphere. 2022 Apr 27;7(2):e0003322. doi: 10.1128/msphere.00033-22. Epub 2022 Mar 21. mSphere. 2022. PMID: 35306876 Free PMC article.

5

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.

Anand A, Patel A, Chen K, Olson CA, Phaneuf PV, Lamoureux C, Hefner Y, Szubin R, Feist AM, Palsson BO. Anand A, et al. Among authors: lamoureux c. Nat Commun. 2022 Jun 27;13(1):3682. doi: 10.1038/s41467-022-30877-5. Nat Commun. 2022. PMID: 35760776 Free PMC article.

6

Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins.

Hirose Y, Poudel S, Sastry AV, Rychel K, Lamoureux CR, Szubin R, Zielinski DC, Lim HG, Menon ND, Bergsten H, Uchiyama S, Hanada T, Kawabata S, Palsson BO, Nizet V. Hirose Y, et al. Among authors: lamoureux cr. mSystems. 2023 Jun 29;8(3):e0024723. doi: 10.1128/msystems.00247-23. Epub 2023 Jun 6. mSystems. 2023. PMID: 37278526 Free PMC article.

7

Machine learning uncovers the Pseudomonas syringae transcriptome in microbial communities and during infection.

Bajpe H, Rychel K, Lamoureux CR, Sastry AV, Palsson BO. Bajpe H, et al. mSystems. 2023 Oct 26;8(5):e0043723. doi: 10.1128/msystems.00437-23. Epub 2023 Aug 28. mSystems. 2023. PMID: 37638727 Free PMC article.

8

Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance.

Rychel K, Tan J, Patel A, Lamoureux C, Hefner Y, Szubin R, Johnsen J, Mohamed ETT, Phaneuf PV, Anand A, Olson CA, Park JH, Sastry AV, Yang L, Feist AM, Palsson BO. Rychel K, et al. Among authors: lamoureux c. Cell Rep. 2023 Sep 26;42(9):113105. doi: 10.1016/j.celrep.2023.113105. Epub 2023 Sep 19. Cell Rep. 2023. PMID: 37713311 Free PMC article.

9

A multi-scale expression and regulation knowledge base for Escherichia coli.

Lamoureux CR, Decker KT, Sastry AV, Rychel K, Gao Y, McConn JL, Zielinski DC, Palsson BO. Lamoureux CR, et al. Nucleic Acids Res. 2023 Oct 27;51(19):10176-10193. doi: 10.1093/nar/gkad750. Nucleic Acids Res. 2023. PMID: 37713610 Free PMC article.

10

Inferred regulons are consistent with regulator binding sequences in E. coli.

Qiu S, Wan X, Liang Y, Lamoureux CR, Akbari A, Palsson BO, Zielinski DC. Qiu S, et al. Among authors: lamoureux cr. PLoS Comput Biol. 2024 Jan 22;20(1):e1011824. doi: 10.1371/journal.pcbi.1011824. eCollection 2024 Jan. PLoS Comput Biol. 2024. PMID: 38252668 Free PMC article.

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