Gagnon JA - Search Results

1

Orthogonal CRISPR-Cas tools for genome editing, inhibition, and CRISPR recording in zebrafish embryos.

Takasugi PR, Wang S, Truong KT, Drage EP, Kanishka SN, Higbee MA, Bamidele N, Ojelabi O, Sontheimer EJ, Gagnon JA. Takasugi PR, et al. Among authors: gagnon ja. Genetics. 2022 Jan 4;220(1):iyab196. doi: 10.1093/genetics/iyab196. Genetics. 2022. PMID: 34735006 Free PMC article.

2

Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT.

Raj B, Gagnon JA, Schier AF. Raj B, et al. Among authors: gagnon ja. Nat Protoc. 2018 Nov;13(11):2685-2713. doi: 10.1038/s41596-018-0058-x. Nat Protoc. 2018. PMID: 30353175 Free PMC article.

3

Accurate analysis of genuine CRISPR editing events with ampliCan.

Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E. Labun K, et al. Among authors: gagnon ja. Genome Res. 2019 May;29(5):843-847. doi: 10.1101/gr.244293.118. Epub 2019 Mar 8. Genome Res. 2019. PMID: 30850374 Free PMC article.

4

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.

Raj B, Wagner DE, McKenna A, Pandey S, Klein AM, Shendure J, Gagnon JA, Schier AF. Raj B, et al. Among authors: gagnon ja. Nat Biotechnol. 2018 Jun;36(5):442-450. doi: 10.1038/nbt.4103. Epub 2018 Mar 28. Nat Biotechnol. 2018. PMID: 29608178 Free PMC article.

5

The lives of cells, recorded.

Askary A, Chen W, Choi J, Du LY, Elowitz MB, Gagnon JA, Schier AF, Seidel S, Shendure J, Stadler T, Tran M. Askary A, et al. Among authors: gagnon ja. Nat Rev Genet. 2024 Nov 25. doi: 10.1038/s41576-024-00788-w. Online ahead of print. Nat Rev Genet. 2024. PMID: 39587306 Review.

6

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.

Labun K, Montague TG, Gagnon JA, Thyme SB, Valen E. Labun K, et al. Among authors: gagnon ja. Nucleic Acids Res. 2016 Jul 8;44(W1):W272-6. doi: 10.1093/nar/gkw398. Epub 2016 May 16. Nucleic Acids Res. 2016. PMID: 27185894 Free PMC article.

7

Recording development with single cell dynamic lineage tracing.

McKenna A, Gagnon JA. McKenna A, et al. Among authors: gagnon ja. Development. 2019 Jun 27;146(12):dev169730. doi: 10.1242/dev.169730. Development. 2019. PMID: 31249005 Free PMC article. Review.

8

CRISPR Rube Goldberg machines for visualizing cell lineage.

Carey CM, Gagnon JA. Carey CM, et al. Among authors: gagnon ja. Nat Neurosci. 2020 Dec;23(12):1469-1471. doi: 10.1038/s41593-020-0694-7. Nat Neurosci. 2020. PMID: 32770155 No abstract available.

9

Whole-organism lineage tracing by combinatorial and cumulative genome editing.

McKenna A, Findlay GM, Gagnon JA, Horwitz MS, Schier AF, Shendure J. McKenna A, et al. Among authors: gagnon ja. Science. 2016 Jul 29;353(6298):aaf7907. doi: 10.1126/science.aaf7907. Epub 2016 May 26. Science. 2016. PMID: 27229144 Free PMC article.

10

Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish.

Odstrcil I, Petkova MD, Haesemeyer M, Boulanger-Weill J, Nikitchenko M, Gagnon JA, Oteiza P, Schalek R, Peleg A, Portugues R, Lichtman JW, Engert F. Odstrcil I, et al. Among authors: gagnon ja. Curr Biol. 2022 Jan 10;32(1):176-189.e5. doi: 10.1016/j.cub.2021.11.007. Epub 2021 Nov 24. Curr Biol. 2022. PMID: 34822765 Free PMC article.

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