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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.
Biancalani T, Scalia G, Buffoni L, Avasthi R, Lu Z, Sanger A, Tokcan N, Vanderburg CR, Segerstolpe Å, Zhang M, Avraham-Davidi I, Vickovic S, Nitzan M, Ma S, Subramanian A, Lipinski M, Buenrostro J, Brown NB, Fanelli D, Zhuang X, Macosko EZ, Regev A. Biancalani T, et al. Among authors: avraham davidi i. Nat Methods. 2021 Nov;18(11):1352-1362. doi: 10.1038/s41592-021-01264-7. Epub 2021 Oct 28. Nat Methods. 2021. PMID: 34711971 Free PMC article.
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Habib N, Li Y, Heidenreich M, Swiech L, Avraham-Davidi I, Trombetta JJ, Hession C, Zhang F, Regev A. Habib N, et al. Among authors: avraham davidi i. Science. 2016 Aug 26;353(6302):925-8. doi: 10.1126/science.aad7038. Epub 2016 Jul 28. Science. 2016. PMID: 27471252 Free PMC article.
Massively parallel single-nucleus RNA-seq with DroNc-seq.
Habib N, Avraham-Davidi I, Basu A, Burks T, Shekhar K, Hofree M, Choudhury SR, Aguet F, Gelfand E, Ardlie K, Weitz DA, Rozenblatt-Rosen O, Zhang F, Regev A. Habib N, et al. Among authors: avraham davidi i. Nat Methods. 2017 Oct;14(10):955-958. doi: 10.1038/nmeth.4407. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846088 Free PMC article.
Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.
Kaur G, Porter CBM, Ashenberg O, Lee J, Riesenfeld SJ, Hofree M, Aggelakopoulou M, Subramanian A, Kuttikkatte SB, Attfield KE, Desel CAE, Davies JL, Evans HG, Avraham-Davidi I, Nguyen LT, Dionne DA, Neumann AE, Jensen LT, Barber TR, Soilleux E, Carrington M, McVean G, Rozenblatt-Rosen O, Regev A, Fugger L. Kaur G, et al. Among authors: avraham davidi i. Nat Commun. 2022 Jul 29;13(1):4398. doi: 10.1038/s41467-022-32171-w. Nat Commun. 2022. PMID: 35906236 Free PMC article.
Emergence of division of labor in tissues through cell interactions and spatial cues.
Adler M, Moriel N, Goeva A, Avraham-Davidi I, Mages S, Adams TS, Kaminski N, Macosko EZ, Regev A, Medzhitov R, Nitzan M. Adler M, et al. Among authors: avraham davidi i. Cell Rep. 2023 May 30;42(5):112412. doi: 10.1016/j.celrep.2023.112412. Epub 2023 Apr 21. Cell Rep. 2023. PMID: 37086403 Free PMC article.
ApoB-containing lipoproteins regulate angiogenesis by modulating expression of VEGF receptor 1.
Avraham-Davidi I, Ely Y, Pham VN, Castranova D, Grunspan M, Malkinson G, Gibbs-Bar L, Mayseless O, Allmog G, Lo B, Warren CM, Chen TT, Ungos J, Kidd K, Shaw K, Rogachev I, Wan W, Murphy PM, Farber SA, Carmel L, Shelness GS, Iruela-Arispe ML, Weinstein BM, Yaniv K. Avraham-Davidi I, et al. Nat Med. 2012 Jun;18(6):967-73. doi: 10.1038/nm.2759. Nat Med. 2012. PMID: 22581286 Free PMC article.
Lipid signaling in the endothelium.
Avraham-Davidi I, Grunspan M, Yaniv K. Avraham-Davidi I, et al. Exp Cell Res. 2013 May 15;319(9):1298-305. doi: 10.1016/j.yexcr.2013.01.009. Epub 2013 Jan 15. Exp Cell Res. 2013. PMID: 23328305 Review. No abstract available.
Zebrafish as a model for apolipoprotein biology: comprehensive expression analysis and a role for ApoA-IV in regulating food intake.
Otis JP, Zeituni EM, Thierer JH, Anderson JL, Brown AC, Boehm ED, Cerchione DM, Ceasrine AM, Avraham-Davidi I, Tempelhof H, Yaniv K, Farber SA. Otis JP, et al. Among authors: avraham davidi i. Dis Model Mech. 2015 Mar;8(3):295-309. doi: 10.1242/dmm.018754. Epub 2015 Jan 29. Dis Model Mech. 2015. PMID: 25633982 Free PMC article.
14 results