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SMOG 2 and OpenSMOG: Extending the limits of structure-based models.
de Oliveira AB Jr, Contessoto VG, Hassan A, Byju S, Wang A, Wang Y, Dodero-Rojas E, Mohanty U, Noel JK, Onuchic JN, Whitford PC. de Oliveira AB Jr, et al. Among authors: dodero rojas e. Protein Sci. 2022 Jan;31(1):158-172. doi: 10.1002/pro.4209. Epub 2021 Nov 1. Protein Sci. 2022. PMID: 34655449 Free PMC article.
Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.
Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, Libutti SK, Whitford PC, Burley SK, Onuchic JN, Arap W, Pasqualini R. Staquicini DI, et al. Among authors: dodero rojas e. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2105739118. doi: 10.1073/pnas.2105739118. Proc Natl Acad Sci U S A. 2021. PMID: 34234013 Free PMC article.
Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection.
Markosian C, Staquicini DI, Dogra P, Dodero-Rojas E, Lubin JH, Tang FHF, Smith TL, Contessoto VG, Libutti SK, Wang Z, Cristini V, Khare SD, Whitford PC, Burley SK, Onuchic JN, Pasqualini R, Arap W. Markosian C, et al. Among authors: dodero rojas e. Mol Biol Evol. 2022 May 3;39(5):msac091. doi: 10.1093/molbev/msac091. Mol Biol Evol. 2022. PMID: 35511693 Free PMC article.
Structure and inhibition of SARS-CoV-2 spike refolding in membranes.
Grunst MW, Qin Z, Dodero-Rojas E, Ding S, Prévost J, Chen Y, Hu Y, Pazgier M, Wu S, Xie X, Finzi A, Onuchic JN, Whitford PC, Mothes W, Li W. Grunst MW, et al. Among authors: dodero rojas e. Science. 2024 Aug 16;385(6710):757-765. doi: 10.1126/science.adn5658. Epub 2024 Aug 15. Science. 2024. PMID: 39146425
Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools.
Markosian C, Staquicini DI, Dogra P, Dodero-Rojas E, Tang FHF, Smith TL, Contessoto VG, Libutti SK, Wang Z, Cristini V, Whitford PC, Burley SK, Onuchic JN, Pasqualini R, Arap W. Markosian C, et al. Among authors: dodero rojas e. bioRxiv [Preprint]. 2021 Aug 30:2021.08.30.458222. doi: 10.1101/2021.08.30.458222. bioRxiv. 2021. Update in: Mol Biol Evol. 2022 May 3;39(5):msac091. doi: 10.1093/molbev/msac091 PMID: 34676381 Free PMC article. Updated. Preprint.
Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.
Staquicini DI, Tang FHF, Markosian C, Yao VJ, Staquicini FI, Dodero-Rojas E, Contessoto VG, Davis D, O'Brien P, Habib N, Smith TL, Bruiners N, Sidman RL, Gennaro ML, Lattime EC, Libutti SK, Whitford PC, Burley SK, Onuchic JN, Arap W, Pasqualini R. Staquicini DI, et al. Among authors: dodero rojas e. bioRxiv [Preprint]. 2021 Mar 16:2021.03.15.435496. doi: 10.1101/2021.03.15.435496. bioRxiv. 2021. Update in: Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2105739118. doi: 10.1073/pnas.2105739118 PMID: 33758865 Free PMC article. Updated. Preprint.