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SMOG 2 and OpenSMOG: Extending the limits of structure-based models.
de Oliveira AB Jr, Contessoto VG, Hassan A, Byju S, Wang A, Wang Y, Dodero-Rojas E, Mohanty U, Noel JK, Onuchic JN, Whitford PC. de Oliveira AB Jr, et al. Among authors: byju s. Protein Sci. 2022 Jan;31(1):158-172. doi: 10.1002/pro.4209. Epub 2021 Nov 1. Protein Sci. 2022. PMID: 34655449 Free PMC article.
The energetics of subunit rotation in the ribosome.
Hassan A, Byju S, Whitford PC. Hassan A, et al. Among authors: byju s. Biophys Rev. 2021 Dec 4;13(6):1029-1037. doi: 10.1007/s12551-021-00877-8. eCollection 2021 Dec. Biophys Rev. 2021. PMID: 35059025 Free PMC article. Review.
The energy landscape of the ribosome.
Byju S, Hassan A, Whitford PC. Byju S, et al. Biopolymers. 2024 Mar;115(2):e23570. doi: 10.1002/bip.23570. Epub 2023 Dec 5. Biopolymers. 2024. PMID: 38051695 Review.