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Cell segmentation in imaging-based spatial transcriptomics.
Petukhov V, Xu RJ, Soldatov RA, Cadinu P, Khodosevich K, Moffitt JR, Kharchenko PV. Petukhov V, et al. Among authors: soldatov ra. Nat Biotechnol. 2022 Mar;40(3):345-354. doi: 10.1038/s41587-021-01044-w. Epub 2021 Oct 14. Nat Biotechnol. 2022. PMID: 34650268
RNA velocity of single cells.
La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV. La Manno G, et al. Nature. 2018 Aug;560(7719):494-498. doi: 10.1038/s41586-018-0414-6. Epub 2018 Aug 8. Nature. 2018. PMID: 30089906 Free PMC article.
RNA velocity-current challenges and future perspectives.
Bergen V, Soldatov RA, Kharchenko PV, Theis FJ. Bergen V, et al. Among authors: soldatov ra. Mol Syst Biol. 2021 Aug;17(8):e10282. doi: 10.15252/msb.202110282. Mol Syst Biol. 2021. PMID: 34435732 Free PMC article. Review.
Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth.
Krivanek J, Soldatov RA, Kastriti ME, Chontorotzea T, Herdina AN, Petersen J, Szarowska B, Landova M, Matejova VK, Holla LI, Kuchler U, Zdrilic IV, Vijaykumar A, Balic A, Marangoni P, Klein OD, Neves VCM, Yianni V, Sharpe PT, Harkany T, Metscher BD, Bajénoff M, Mina M, Fried K, Kharchenko PV, Adameyko I. Krivanek J, et al. Among authors: soldatov ra. Nat Commun. 2020 Sep 23;11(1):4816. doi: 10.1038/s41467-020-18512-7. Nat Commun. 2020. PMID: 32968047 Free PMC article.
Spatiotemporal structure of cell fate decisions in murine neural crest.
Soldatov R, Kaucka M, Kastriti ME, Petersen J, Chontorotzea T, Englmaier L, Akkuratova N, Yang Y, Häring M, Dyachuk V, Bock C, Farlik M, Piacentino ML, Boismoreau F, Hilscher MM, Yokota C, Qian X, Nilsson M, Bronner ME, Croci L, Hsiao WY, Guertin DA, Brunet JF, Consalez GG, Ernfors P, Fried K, Kharchenko PV, Adameyko I. Soldatov R, et al. Science. 2019 Jun 7;364(6444):eaas9536. doi: 10.1126/science.aas9536. Science. 2019. PMID: 31171666
Population sequencing data reveal a compendium of mutational processes in the human germ line.
Seplyarskiy VB, Soldatov RA, Koch E, McGinty RJ, Goldmann JM, Hernandez RD, Barnes K, Correa A, Burchard EG, Ellinor PT, McGarvey ST, Mitchell BD, Vasan RS, Redline S, Silverman E, Weiss ST, Arnett DK, Blangero J, Boerwinkle E, He J, Montgomery C, Rao DC, Rotter JI, Taylor KD, Brody JA, Chen YI, de las Fuentes L, Hwu CM, Rich SS, Manichaikul AW, Mychaleckyj JC, Palmer ND, Smith JA, Kardia SLR, Peyser PA, Bielak LF, O'Connor TD, Emery LS; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Population Genetics Working Group; Gilissen C, Wong WSW, Kharchenko PV, Sunyaev S. Seplyarskiy VB, et al. Among authors: soldatov ra. Science. 2021 Aug 27;373(6558):1030-1035. doi: 10.1126/science.aba7408. Epub 2021 Aug 12. Science. 2021. PMID: 34385354 Free PMC article.
Evolution of Local Mutation Rate and Its Determinants.
Terekhanova NV, Seplyarskiy VB, Soldatov RA, Bazykin GA. Terekhanova NV, et al. Among authors: soldatov ra. Mol Biol Evol. 2017 May 1;34(5):1100-1109. doi: 10.1093/molbev/msx060. Mol Biol Evol. 2017. PMID: 28138076 Free PMC article.
15 results