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Androgen responsive intronic non-coding RNAs.
Louro R, Nakaya HI, Amaral PP, Festa F, Sogayar MC, da Silva AM, Verjovski-Almeida S, Reis EM. Louro R, et al. Among authors: amaral pp. BMC Biol. 2007 Jan 30;5:4. doi: 10.1186/1741-7007-5-4. BMC Biol. 2007. PMID: 17263875 Free PMC article.
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination.
de Lima DS, Cardozo LE, Maracaja-Coutinho V, Suhrbier A, Mane K, Jeffries D, Silveira ELV, Amaral PP, Rappuoli R, de Silva TI, Nakaya HI. de Lima DS, et al. Among authors: amaral pp. Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17121-17126. doi: 10.1073/pnas.1822046116. Epub 2019 Aug 9. Proc Natl Acad Sci U S A. 2019. PMID: 31399544 Free PMC article.
Long non-coding RNAs: definitions, functions, challenges and recommendations.
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, Kanduri C, Kapranov P, Lawrence JB, Lee JT, Mendell JT, Mercer TR, Moore KJ, Nakagawa S, Rinn JL, Spector DL, Ulitsky I, Wan Y, Wilusz JE, Wu M. Mattick JS, et al. Among authors: amaral pp. Nat Rev Mol Cell Biol. 2023 Jun;24(6):430-447. doi: 10.1038/s41580-022-00566-8. Epub 2023 Jan 3. Nat Rev Mol Cell Biol. 2023. PMID: 36596869 Free PMC article. Review.
RNA, Genome Output and Input.
Morf J, Basu S, Amaral PP. Morf J, et al. Among authors: amaral pp. Front Genet. 2020 Oct 27;11:589413. doi: 10.3389/fgene.2020.589413. eCollection 2020. Front Genet. 2020. PMID: 33193726 Free PMC article.
lncRNAdb: a reference database for long noncoding RNAs.
Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS. Amaral PP, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D146-51. doi: 10.1093/nar/gkq1138. Epub 2010 Nov 25. Nucleic Acids Res. 2011. PMID: 21112873 Free PMC article.
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS. Gascoigne DK, et al. Among authors: amaral pp. Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7. Bioinformatics. 2012. PMID: 23044541
27 results