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Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Langelier C, Lu D, Kalantar K, Chu V, Glascock A, Guerrero E, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones A, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani P, Pickering A, Raphenya A, Alcock B, McArthur A. Langelier C, et al. Among authors: reynoso l. Res Sq [Preprint]. 2024 May 2:rs.3.rs-4271356. doi: 10.21203/rs.3.rs-4271356/v1. Res Sq. 2024. PMID: 38746293 Free PMC article. Preprint.
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Lu D, Kalantar KL, Chu VT, Glascock AL, Guerrero ES, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones AE, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani PM, Pickering AJ, Raphenya AR, Alcock BP, McArthur AG, Langelier CR. Lu D, et al. Among authors: reynoso l. bioRxiv [Preprint]. 2024 Apr 18:2024.04.12.589250. doi: 10.1101/2024.04.12.589250. bioRxiv. 2024. PMID: 38645206 Free PMC article. Preprint.
The Receptor Binding Domain of SARS-CoV-2 Lambda Variant Has a Better Chance Than the Delta Variant in Evading BNT162b2 COVID-19 mRNA Vaccine-Induced Humoral Immunity.
Liu H, Wei P, Aviszus K, Zhang Q, Linderberger J, Yang J, Liu J, Chen Z, Waheed H, Reynoso L, Downey GP, Frankel SK, Kappler JW, Marrack P, Zhang G. Liu H, et al. Among authors: reynoso l. Int J Mol Sci. 2022 Sep 26;23(19):11325. doi: 10.3390/ijms231911325. Int J Mol Sci. 2022. PMID: 36232627 Free PMC article.
The Lambda variant of SARS-CoV-2 has a better chance than the Delta variant to escape vaccines.
Liu H, Wei P, Zhang Q, Aviszus K, Linderberger J, Yang J, Liu J, Chen Z, Waheed H, Reynoso L, Downey GP, Frankel SK, Kappler J, Marrack P, Zhang G. Liu H, et al. Among authors: reynoso l. bioRxiv [Preprint]. 2021 Aug 26:2021.08.25.457692. doi: 10.1101/2021.08.25.457692. bioRxiv. 2021. Update in: Int J Mol Sci. 2022 Sep 26;23(19):11325. doi: 10.3390/ijms231911325 PMID: 34462744 Free PMC article. Updated. Preprint.
The basis of a more contagious 501Y.V1 variant of SARS-CoV-2.
Liu H, Zhang Q, Wei P, Chen Z, Aviszus K, Yang J, Downing W, Jiang C, Liang B, Reynoso L, Downey GP, Frankel SK, Kappler J, Marrack P, Zhang G. Liu H, et al. Among authors: reynoso l. Cell Res. 2021 Jun;31(6):720-722. doi: 10.1038/s41422-021-00496-8. Epub 2021 Apr 23. Cell Res. 2021. PMID: 33893398 Free PMC article. No abstract available.
501Y.V2 and 501Y.V3 variants of SARS-CoV-2 lose binding to Bamlanivimab in vitro.
Liu H, Wei P, Zhang Q, Chen Z, Aviszus K, Downing W, Peterson S, Reynoso L, Downey GP, Frankel SK, Kappler J, Marrack P, Zhang G. Liu H, et al. Among authors: reynoso l. bioRxiv [Preprint]. 2021 Feb 16:2021.02.16.431305. doi: 10.1101/2021.02.16.431305. bioRxiv. 2021. Update in: MAbs. 2021 Jan-Dec;13(1):1919285. doi: 10.1080/19420862.2021.1919285 PMID: 33619479 Free PMC article. Updated. Preprint.
The basis of a more contagious 501Y.V1 variant of SARS-COV-2.
Liu H, Zhang Q, Wei P, Chen Z, Aviszus K, Yang J, Downing W, Peterson S, Jiang C, Liang B, Reynoso L, Downey GP, Frankel SK, Kappler J, Marrack P, Zhang G. Liu H, et al. Among authors: reynoso l. bioRxiv [Preprint]. 2021 Feb 2:2021.02.02.428884. doi: 10.1101/2021.02.02.428884. bioRxiv. 2021. Update in: Cell Res. 2021 Jun;31(6):720-722. doi: 10.1038/s41422-021-00496-8 PMID: 33564771 Free PMC article. Updated. Preprint.
IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
Kalantar KL, Carvalho T, de Bourcy CFA, Dimitrov B, Dingle G, Egger R, Han J, Holmes OB, Juan YF, King R, Kislyuk A, Lin MF, Mariano M, Morse T, Reynoso LV, Cruz DR, Sheu J, Tang J, Wang J, Zhang MA, Zhong E, Ahyong V, Lay S, Chea S, Bohl JA, Manning JE, Tato CM, DeRisi JL. Kalantar KL, et al. Among authors: reynoso lv. Gigascience. 2020 Oct 15;9(10):giaa111. doi: 10.1093/gigascience/giaa111. Gigascience. 2020. PMID: 33057676 Free PMC article.
18 results