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SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.
Wikle N, Tran TN, Gentilesco B, Leighow SM, Albert J, Strong ER, Břinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks EM, Boni MF. Wikle N, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Nov 6:2020.11.17.20232918. doi: 10.1101/2020.11.17.20232918. medRxiv. 2021. Update in: Sci Adv. 2022 Jan 28;8(4):eabf9868. doi: 10.1126/sciadv.abf9868. PMID: 34426816 Free PMC article. Updated. Preprint.
Wastewater Surveillance of SARS-CoV-2 across 40 U.S. states.
Wu F, Xiao A, Zhang J, Moniz K, Endo N, Armas F, Bushman M, Chai PR, Duvallet C, Erickson TB, Foppe K, Ghaeli N, Gu X, Hanage WP, Huang KH, Lee WL, Matus M, McElroy KA, Rhode SF, Wuertz S, Thompson J, Alm EJ. Wu F, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Mar 14:2021.03.10.21253235. doi: 10.1101/2021.03.10.21253235. medRxiv. 2021. Update in: Water Res. 2021 Sep 1;202:117400. doi: 10.1016/j.watres.2021.117400. PMID: 33758888 Free PMC article. Updated. Preprint.
Metrics to relate COVID-19 wastewater data to clinical testing dynamics.
Xiao A, Wu F, Bushman M, Zhang J, Imakaev M, Chai PR, Duvallet C, Endo N, Erickson TB, Armas F, Arnold B, Chen H, Chandra F, Ghaeli N, Gu X, Hanage WP, Lee WL, Matus M, McElroy KA, Moniz K, Rhode SF, Thompson J, Alm EJ. Xiao A, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Jun 16:2021.06.10.21258580. doi: 10.1101/2021.06.10.21258580. medRxiv. 2021. Update in: Water Res. 2022 Apr 1;212:118070. doi: 10.1016/j.watres.2022.118070. PMID: 34159339 Free PMC article. Updated. Preprint.
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages.
Petrone ME, Rothman JE, Breban MI, Ott IM, Russell A, Lasek-Nesselquist E, Kelly K, Omerza G, Renzette N, Watkins AE, Kalinich CC, Alpert T, Brito AF, Earnest R, Tikhonova IR, Castaldi C, Kelly JP, Shudt M, Plitnick J, Schneider E, Murphy S, Neal C, Laszlo E, Altajar A, Pearson C, Muyombwe A, Downing R, Razeq J, Niccolai L, Wilson MS, Anderson ML, Wang J, Liu C, Hui P, Mane S, Taylor BP, Hanage WP, Landry ML, Peaper DR, Bilguvar K, Fauver JR, Vogels CBF, Gardner LM, Pitzer VE, St George K, Adams MD, Grubaugh ND. Petrone ME, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Jul 2:2021.07.01.21259859. doi: 10.1101/2021.07.01.21259859. medRxiv. 2021. Update in: Commun Biol. 2022 May 11;5(1):439. doi: 10.1038/s42003-022-03347-3. PMID: 34230938 Free PMC article. Updated. Preprint.
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification.
Baaijens JA, Zulli A, Ott IM, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy K, Ghaeli N, Imakaev M, Mckenzie-Bennett M, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer M, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Sep 2:2021.08.31.21262938. doi: 10.1101/2021.08.31.21262938. medRxiv. 2021. Update in: Genome Biol. 2022 Nov 8;23(1):236. doi: 10.1186/s13059-022-02805-9. PMID: 34494031 Free PMC article. Updated. Preprint.
SARS-CoV-2 attack rate and population immunity in southern New England, March 2020 - May 2021.
Tran TN, Wikle NB, Yang F, Inam H, Leighow S, Gentilesco B, Chan P, Albert E, Strong ER, Pritchard JR, Hanage WP, Hanks EM, Crawford FW, Boni MF. Tran TN, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Dec 7:2021.12.06.21267375. doi: 10.1101/2021.12.06.21267375. medRxiv. 2021. Update in: JAMA Netw Open. 2022 May 2;5(5):e2214171. doi: 10.1001/jamanetworkopen.2022.14171. PMID: 34909789 Free PMC article. Updated. Preprint.
COVID-19 vaccine impact on rates of SARS-CoV-2 cases and post vaccination strain sequences among healthcare workers at an urban academic medical center: a prospective cohort study.
Bouton TC, Lodi S, Turcinovic J, Weber SE, Quinn E, Korn C, Steiner J, Schechter-Perkins EM, Duffy E, Ragan EJ, Taylor BP, Schaeffer B, Miller N, Davidoff R, Hanage WP, Connor J, Pierre C, Jacobson KR. Bouton TC, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Apr 27:2021.03.30.21254655. doi: 10.1101/2021.03.30.21254655. medRxiv. 2021. Update in: Open Forum Infect Dis. 2021 Sep 17;8(10):ofab465. doi: 10.1093/ofid/ofab465. PMID: 33821283 Free PMC article. Updated. Preprint.
Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts.
Siddle KJ, Krasilnikova LA, Moreno GK, Schaffner SF, Vostok J, Fitzgerald NA, Lemieux JE, Barkas N, Loreth C, Specht I, Tomkins-Tinch CH, Silbert J, Schaeffer B, Taylor BP, Loftness B, Johnson H, Schubert PL, Shephard HM, Doucette M, Fink T, Lang AS, Baez S, Beauchamp J, Hennigan S, Buzby E, Ash S, Brown J, Clancy S, Cofsky S, Gagne L, Hall J, Harrington R, Gionet GL, DeRuff KC, Vodzak ME, Adams GC, Dobbins ST, Slack SD, Reilly SK, Anderson LM, Cipicchio MC, DeFelice MT, Grimsby JL, Anderson SE, Blumenstiel BS, Meldrim JC, Rooke HM, Vicente G, Smith NL, Messer KS, Reagan FL, Mandese ZM, Lee MD, Ray MC, Fisher ME, Ulcena MA, Nolet CM, English SE, Larkin KL, Vernest K, Chaluvadi S, Arvidson D, Melchiono M, Covell T, Harik V, Brock-Fisher T, Dunn M, Kearns A, Hanage WP, Bernard C, Philippakis A, Lennon NJ, Gabriel SB, Gallagher GR, Smole S, Madoff LC, Brown CM, Park DJ, MacInnis BL, Sabeti PC. Siddle KJ, et al. Among authors: hanage wp. medRxiv [Preprint]. 2021 Oct 20:2021.10.20.21265137. doi: 10.1101/2021.10.20.21265137. medRxiv. 2021. Update in: Cell. 2022 Feb 3;185(3):485-492.e10. doi: 10.1016/j.cell.2021.12.027. PMID: 34704102 Free PMC article. Updated. Preprint.
219 results