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Statistical analysis of ChIP-seq data with MOSAiCS.
Sun G, Chung D, Liang K, Keleş S. Sun G, et al. Among authors: keles s. Methods Mol Biol. 2013;1038:193-212. doi: 10.1007/978-1-62703-514-9_12. Methods Mol Biol. 2013. PMID: 23872977
atSNP: transcription factor binding affinity testing for regulatory SNP detection.
Zuo C, Shin S, Keleş S. Zuo C, et al. Among authors: keles s. Bioinformatics. 2015 Oct 15;31(20):3353-5. doi: 10.1093/bioinformatics/btv328. Epub 2015 Jun 18. Bioinformatics. 2015. PMID: 26092860 Free PMC article.
RESULTS: We describe A: ffinity T: esting for regulatory SNP: s (atSNP), a computationally efficient R package for identifying rSNPs in silico. atSNP implements an importance sampling algorithm coupled with a first-order Markov model for the background nucleotide sequences …
RESULTS: We describe A: ffinity T: esting for regulatory SNP: s (atSNP), a computationally efficient R package for identifying rSNPs …
Predicting gene expression in massively parallel reporter assays: A comparative study.
Kreimer A, Zeng H, Edwards MD, Guo Y, Tian K, Shin S, Welch R, Wainberg M, Mohan R, Sinnott-Armstrong NA, Li Y, Eraslan G, Amin TB, Tewhey R, Sabeti PC, Goke J, Mueller NS, Kellis M, Kundaje A, Beer MA, Keles S, Gifford DK, Yosef N. Kreimer A, et al. Among authors: keles s. Hum Mutat. 2017 Sep;38(9):1240-1250. doi: 10.1002/humu.23197. Epub 2017 Mar 9. Hum Mutat. 2017. PMID: 28220625 Free PMC article.
400 results