Tiana G - Search Results

1

Polymer Folding Simulations from Hi-C Data.

Zhan Y, Giorgetti L, Tiana G. Zhan Y, et al. Among authors: tiana g. Methods Mol Biol. 2022;2301:259-265. doi: 10.1007/978-1-0716-1390-0_13. Methods Mol Biol. 2022. PMID: 34415540

2

Design and folding of dimeric proteins.

Tiana G, Broglia RA. Tiana G, et al. Proteins. 2002 Oct 1;49(1):82-94. doi: 10.1002/prot.10196. Proteins. 2002. PMID: 12211018

3

Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs.

Giorgetti L, Siggers T, Tiana G, Caprara G, Notarbartolo S, Corona T, Pasparakis M, Milani P, Bulyk ML, Natoli G. Giorgetti L, et al. Among authors: tiana g. Mol Cell. 2010 Feb 12;37(3):418-28. doi: 10.1016/j.molcel.2010.01.016. Mol Cell. 2010. PMID: 20159560 Free article.

4

Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription.

Giorgetti L, Galupa R, Nora EP, Piolot T, Lam F, Dekker J, Tiana G, Heard E. Giorgetti L, et al. Among authors: tiana g. Cell. 2014 May 8;157(4):950-63. doi: 10.1016/j.cell.2014.03.025. Cell. 2014. PMID: 24813616 Free PMC article.

5

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.

Tiana G, Amitai A, Pollex T, Piolot T, Holcman D, Heard E, Giorgetti L. Tiana G, et al. Biophys J. 2016 Mar 29;110(6):1234-45. doi: 10.1016/j.bpj.2016.02.003. Biophys J. 2016. PMID: 27028634 Free PMC article.

6

Looping probability of random heteropolymers helps to understand the scaling properties of biopolymers.

Zhan Y, Giorgetti L, Tiana G. Zhan Y, et al. Among authors: tiana g. Phys Rev E. 2016 Sep;94(3-1):032402. doi: 10.1103/PhysRevE.94.032402. Epub 2016 Sep 2. Phys Rev E. 2016. PMID: 27739813

7

Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes.

Zhan Y, Mariani L, Barozzi I, Schulz EG, Blüthgen N, Stadler M, Tiana G, Giorgetti L. Zhan Y, et al. Among authors: tiana g. Genome Res. 2017 Mar;27(3):479-490. doi: 10.1101/gr.212803.116. Epub 2017 Jan 5. Genome Res. 2017. PMID: 28057745 Free PMC article.

8

Modelling genome-wide topological associating domains in mouse embryonic stem cells.

Zhan Y, Giorgetti L, Tiana G. Zhan Y, et al. Among authors: tiana g. Chromosome Res. 2017 Mar;25(1):5-14. doi: 10.1007/s10577-016-9544-6. Epub 2017 Jan 20. Chromosome Res. 2017. PMID: 28108933 Free article.

9

Integrating experiment, theory and simulation to determine the structure and dynamics of mammalian chromosomes.

Tiana G, Giorgetti L. Tiana G, et al. Curr Opin Struct Biol. 2018 Apr;49:11-17. doi: 10.1016/j.sbi.2017.10.016. Epub 2017 Nov 9. Curr Opin Struct Biol. 2018. PMID: 29128709 Free article. Review.

10

Spontaneous domain formation in disordered copolymers as a mechanism for chromosome structuring.

Negri M , Gherardi M , Tiana G , Cosentino Lagomarsino M . Negri M , et al. Among authors: tiana g. Soft Matter. 2018 Jul 25;14(29):6128-6136. doi: 10.1039/c8sm00468d. Soft Matter. 2018. PMID: 29998272 Free article.

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