Rigden DJ - Search Results

1

Assessing the utility of CASP14 models for molecular replacement.

Millán C, Keegan RM, Pereira J, Sammito MD, Simpkin AJ, McCoy AJ, Lupas AN, Hartmann MD, Rigden DJ, Read RJ. Millán C, et al. Among authors: rigden dj. Proteins. 2021 Dec;89(12):1752-1769. doi: 10.1002/prot.26214. Epub 2021 Aug 21. Proteins. 2021. PMID: 34387010 Free PMC article.

2

Molecular replacement using ab initio polyalanine models generated with ROSETTA.

Rigden DJ, Keegan RM, Winn MD. Rigden DJ, et al. Acta Crystallogr D Biol Crystallogr. 2008 Dec;64(Pt 12):1288-91. doi: 10.1107/S0907444908033192. Epub 2008 Nov 18. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 19018106

3

AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models.

Bibby J, Keegan RM, Mayans O, Winn MD, Rigden DJ. Bibby J, et al. Among authors: rigden dj. Acta Crystallogr D Biol Crystallogr. 2012 Dec;68(Pt 12):1622-31. doi: 10.1107/S0907444912039194. Epub 2012 Nov 9. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 23151627

4

Crystal structure of the nipah virus phosphoprotein tetramerization domain.

Bruhn JF, Barnett KC, Bibby J, Thomas JM, Keegan RM, Rigden DJ, Bornholdt ZA, Saphire EO. Bruhn JF, et al. Among authors: rigden dj. J Virol. 2014 Jan;88(1):758-62. doi: 10.1128/JVI.02294-13. Epub 2013 Oct 23. J Virol. 2014. PMID: 24155387 Free PMC article.

5

Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement.

Bibby J, Keegan RM, Mayans O, Winn MD, Rigden DJ. Bibby J, et al. Among authors: rigden dj. Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2194-201. doi: 10.1107/S0907444913018453. Epub 2013 Oct 12. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 24189230 Free PMC article.

6

Conversion of a disulfide bond into a thioacetal group during echinomycin biosynthesis.

Hotta K, Keegan RM, Ranganathan S, Fang M, Bibby J, Winn MD, Sato M, Lian M, Watanabe K, Rigden DJ, Kim CY. Hotta K, et al. Among authors: rigden dj. Angew Chem Int Ed Engl. 2014 Jan 13;53(3):824-8. doi: 10.1002/anie.201307404. Angew Chem Int Ed Engl. 2014. PMID: 24302672

7

Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models.

Keegan RM, Bibby J, Thomas J, Xu D, Zhang Y, Mayans O, Winn MD, Rigden DJ. Keegan RM, et al. Among authors: rigden dj. Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):338-43. doi: 10.1107/S1399004714025784. Epub 2015 Jan 23. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 25664744 Free PMC article.

8

Routine phasing of coiled-coil protein crystal structures with AMPLE.

Thomas JM, Keegan RM, Bibby J, Winn MD, Mayans O, Rigden DJ. Thomas JM, et al. Among authors: rigden dj. IUCrJ. 2015 Feb 26;2(Pt 2):198-206. doi: 10.1107/S2052252515002080. eCollection 2015 Mar 1. IUCrJ. 2015. PMID: 25866657 Free PMC article.

9

GP0.4 from bacteriophage T7: in silico characterisation of its structure and interaction with E. coli FtsZ.

Simpkin AJ, Rigden DJ. Simpkin AJ, et al. Among authors: rigden dj. BMC Res Notes. 2016 Jul 13;9:343. doi: 10.1186/s13104-016-2149-5. BMC Res Notes. 2016. PMID: 27411831 Free PMC article.

10

Residue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds.

Simkovic F, Thomas JM, Keegan RM, Winn MD, Mayans O, Rigden DJ. Simkovic F, et al. Among authors: rigden dj. IUCrJ. 2016 Jun 15;3(Pt 4):259-70. doi: 10.1107/S2052252516008113. eCollection 2016 Jul 1. IUCrJ. 2016. PMID: 27437113 Free PMC article.

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