Koide S - Search Results

1

Two-dimensional multiplexed assay for rapid and deep SARS-CoV-2 serology profiling and for machine learning prediction of neutralization capacity.

Koide A, Panchenko T, Wang C, Thannickal SA, Romero LA, Teng KW, Li FZ, Akkappedi P, Corrado AD, Caro J, Diefenbach C, Samanovic MI, Mulligan MJ, Hattori T, Stapleford KA, Li H, Koide S. Koide A, et al. Among authors: koide s. bioRxiv [Preprint]. 2021 Aug 4:2021.08.03.454782. doi: 10.1101/2021.08.03.454782. bioRxiv. 2021. PMID: 34373852 Free PMC article. Preprint.

2

A stable single-layer beta-sheet without a hydrophobic core.

Pham TN, Koide A, Koide S. Pham TN, et al. Among authors: koide s, koide a. Nat Struct Biol. 1998 Feb;5(2):115-9. doi: 10.1038/nsb0298-115. Nat Struct Biol. 1998. PMID: 9461076

3

The fibronectin type III domain as a scaffold for novel binding proteins.

Koide A, Bailey CW, Huang X, Koide S. Koide A, et al. Among authors: koide s. J Mol Biol. 1998 Dec 11;284(4):1141-51. doi: 10.1006/jmbi.1998.2238. J Mol Biol. 1998. PMID: 9837732 Free article.

4

Solution conformation and amyloid-like fibril formation of a polar peptide derived from a beta-hairpin in the OspA single-layer beta-sheet.

Ohnishi S, Koide A, Koide S. Ohnishi S, et al. Among authors: koide s, koide a. J Mol Biol. 2000 Aug 11;301(2):477-89. doi: 10.1006/jmbi.2000.3980. J Mol Biol. 2000. PMID: 10926522 Free article.

5

Formation of the single-layer beta-sheet of Borrelia burgdorferi OspA in the absence of the C-terminal capping globular domain.

Huang X, Nakagawa T, Tamura A, Link K, Koide A, Koide S. Huang X, et al. Among authors: koide s, koide a. J Mol Biol. 2001 Apr 27;308(2):367-75. doi: 10.1006/jmbi.2001.4579. J Mol Biol. 2001. PMID: 11327773

6

Stabilization of a fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface.

Koide A, Jordan MR, Horner SR, Batori V, Koide S. Koide A, et al. Among authors: koide s. Biochemistry. 2001 Aug 28;40(34):10326-33. doi: 10.1021/bi010916y. Biochemistry. 2001. PMID: 11513611

7

The roles of turn formation and cross-strand interactions in fibrillization of peptides derived from the OspA single-layer beta-sheet.

Ohnishi S, Koide A, Koide S. Ohnishi S, et al. Among authors: koide s, koide a. Protein Sci. 2001 Oct;10(10):2083-92. doi: 10.1110/ps.15901. Protein Sci. 2001. PMID: 11567099 Free PMC article.

8

Probing protein conformational changes in living cells by using designer binding proteins: application to the estrogen receptor.

Koide A, Abbatiello S, Rothgery L, Koide S. Koide A, et al. Among authors: koide s. Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1253-8. doi: 10.1073/pnas.032665299. Epub 2002 Jan 29. Proc Natl Acad Sci U S A. 2002. PMID: 11818562 Free PMC article.

9

Engineered fibronectin type III domain with a RGDWXE sequence binds with enhanced affinity and specificity to human alphavbeta3 integrin.

Richards J, Miller M, Abend J, Koide A, Koide S, Dewhurst S. Richards J, et al. Among authors: koide s, koide a. J Mol Biol. 2003 Mar 7;326(5):1475-88. doi: 10.1016/s0022-2836(03)00082-2. J Mol Biol. 2003. PMID: 12595259

10

Exploring the potential of the monobody scaffold: effects of loop elongation on the stability of a fibronectin type III domain.

Batori V, Koide A, Koide S. Batori V, et al. Among authors: koide s, koide a. Protein Eng. 2002 Dec;15(12):1015-20. doi: 10.1093/protein/15.12.1015. Protein Eng. 2002. PMID: 12601141

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