Garmire LX - Search Results

1

Computational reconstruction of the signalling networks surrounding implanted biomaterials from single-cell transcriptomics.

Cherry C, Maestas DR, Han J, Andorko JI, Cahan P, Fertig EJ, Garmire LX, Elisseeff JH. Cherry C, et al. Among authors: garmire lx. Nat Biomed Eng. 2021 Oct;5(10):1228-1238. doi: 10.1038/s41551-021-00770-5. Epub 2021 Aug 2. Nat Biomed Eng. 2021. PMID: 34341534 Free PMC article.

2

Enter the Matrix: Factorization Uncovers Knowledge from Omics.

Stein-O'Brien GL, Arora R, Culhane AC, Favorov AV, Garmire LX, Greene CS, Goff LA, Li Y, Ngom A, Ochs MF, Xu Y, Fertig EJ. Stein-O'Brien GL, et al. Among authors: garmire lx. Trends Genet. 2018 Oct;34(10):790-805. doi: 10.1016/j.tig.2018.07.003. Epub 2018 Aug 22. Trends Genet. 2018. PMID: 30143323 Free PMC article. Review.

3

Single cell transcriptome research in human placenta.

Li H, Huang Q, Liu Y, Garmire LX. Li H, et al. Among authors: garmire lx. Reproduction. 2020 Dec;160(6):R155-R167. doi: 10.1530/REP-20-0231. Reproduction. 2020. PMID: 33112783 Free PMC article. Review.

4

Challenges and perspectives in computational deconvolution of genomics data.

Garmire LX, Li Y, Huang Q, Xu C, Teichmann SA, Kaminski N, Pellegrini M, Nguyen Q, Teschendorff AE. Garmire LX, et al. Nat Methods. 2024 Mar;21(3):391-400. doi: 10.1038/s41592-023-02166-6. Epub 2024 Feb 19. Nat Methods. 2024. PMID: 38374264 Review.

5

ImageDoubler: image-based doublet identification in single-cell sequencing.

Deng K, Xu X, Zhou M, Li H, Keller ET, Shelley G, Lu A, Garmire L, Guan Y. Deng K, et al. Nat Commun. 2025 Jan 2;16(1):21. doi: 10.1038/s41467-024-55434-0. Nat Commun. 2025. PMID: 39747095 Free PMC article.

6

Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage.

Poirion O, Zhu X, Ching T, Garmire LX. Poirion O, et al. Among authors: garmire lx. Nat Commun. 2018 Nov 20;9(1):4892. doi: 10.1038/s41467-018-07170-5. Nat Commun. 2018. PMID: 30459309 Free PMC article.

7

Emerging artificial intelligence applications in Spatial Transcriptomics analysis.

Li Y, Stanojevic S, Garmire LX. Li Y, et al. Among authors: garmire lx. Comput Struct Biotechnol J. 2022 Jun 2;20:2895-2908. doi: 10.1016/j.csbj.2022.05.056. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35765645 Free PMC article. Review.

8

Deep learning and transfer learning identify breast cancer survival subtypes from single-cell imaging data.

Yadav S, Zhou S, He B, Du Y, Garmire LX. Yadav S, et al. Among authors: garmire lx. Commun Med (Lond). 2023 Dec 19;3(1):187. doi: 10.1038/s43856-023-00414-6. Commun Med (Lond). 2023. PMID: 38114659 Free PMC article.

9

Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data.

Huang Q, Liu Y, Du Y, Garmire LX. Huang Q, et al. Among authors: garmire lx. Genomics Proteomics Bioinformatics. 2021 Apr;19(2):267-281. doi: 10.1016/j.gpb.2020.07.004. Epub 2020 Dec 24. Genomics Proteomics Bioinformatics. 2021. PMID: 33359678 Free PMC article.

10

A Dual-Filtration System for Single-Cell Sequencing of Circulating Tumor Cells and Clusters in HCC.

Chen VL, Huang Q, Harouaka R, Du Y, Lok AS, Parikh ND, Garmire LX, Wicha MS. Chen VL, et al. Among authors: garmire lx. Hepatol Commun. 2022 Jun;6(6):1482-1491. doi: 10.1002/hep4.1900. Epub 2022 Jan 23. Hepatol Commun. 2022. PMID: 35068084 Free PMC article.

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