Baker D - Search Results

1

Protein oligomer modeling guided by predicted interchain contacts in CASP14.

Baek M, Anishchenko I, Park H, Humphreys IR, Baker D. Baek M, et al. Among authors: baker d. Proteins. 2021 Dec;89(12):1824-1833. doi: 10.1002/prot.26197. Epub 2021 Aug 23. Proteins. 2021. PMID: 34324224 Free PMC article.

2

Local interactions and the optimization of protein folding.

Doyle R, Simons K, Qian H, Baker D. Doyle R, et al. Among authors: baker d. Proteins. 1997 Nov;29(3):282-91. doi: 10.1002/(sici)1097-0134(199711)29:3<282::aid-prot3>3.0.co;2-d. Proteins. 1997. PMID: 9365984

3

Blind predictions of local protein structure in CASP2 targets using the I-sites library.

Bystroff C, Baker D. Bystroff C, et al. Among authors: baker d. Proteins. 1997;Suppl 1:167-71. doi: 10.1002/(sici)1097-0134(1997)1+<167::aid-prot21>3.3.co;2-y. Proteins. 1997. PMID: 9485508

4

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins.

Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Simons KT, et al. Among authors: baker d. Proteins. 1999 Jan 1;34(1):82-95. doi: 10.1002/(sici)1097-0134(19990101)34:1<82::aid-prot7>3.0.co;2-a. Proteins. 1999. PMID: 10336385

5

Ab initio protein structure prediction of CASP III targets using ROSETTA.

Simons KT, Bonneau R, Ruczinski I, Baker D. Simons KT, et al. Among authors: baker d. Proteins. 1999;Suppl 3:171-6. doi: 10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. Proteins. 1999. PMID: 10526365

6

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

Bonneau R, Strauss CE, Baker D. Bonneau R, et al. Among authors: baker d. Proteins. 2001 Apr 1;43(1):1-11. doi: 10.1002/1097-0134(20010401)43:1<1::aid-prot1012>3.0.co;2-a. Proteins. 2001. PMID: 11170209

7

Functional inferences from blind ab initio protein structure predictions.

Bonneau R, Tsai J, Ruczinski I, Baker D. Bonneau R, et al. Among authors: baker d. J Struct Biol. 2001 May-Jun;134(2-3):186-90. doi: 10.1006/jsbi.2000.4370. J Struct Biol. 2001. PMID: 11551178 Review.

8

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Among authors: baker d. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

9

Distributions of beta sheets in proteins with application to structure prediction.

Ruczinski I, Kooperberg C, Bonneau R, Baker D. Ruczinski I, et al. Among authors: baker d. Proteins. 2002 Jul 1;48(1):85-97. doi: 10.1002/prot.10123. Proteins. 2002. PMID: 12012340

10

Protein-protein docking predictions for the CAPRI experiment.

Gray JJ, Moughon SE, Kortemme T, Schueler-Furman O, Misura KM, Morozov AV, Baker D. Gray JJ, et al. Among authors: baker d. Proteins. 2003 Jul 1;52(1):118-22. doi: 10.1002/prot.10384. Proteins. 2003. PMID: 12784377

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