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Accurate prediction of protein structures and interactions using a three-track neural network.
Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D. Baek M, et al. Among authors: schaeffer rd. Science. 2021 Aug 20;373(6557):871-876. doi: 10.1126/science.abj8754. Epub 2021 Jul 15. Science. 2021. PMID: 34282049 Free PMC article.
ECOD: an evolutionary classification of protein domains.
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV. Cheng H, et al. Among authors: schaeffer rd. PLoS Comput Biol. 2014 Dec 4;10(12):e1003926. doi: 10.1371/journal.pcbi.1003926. eCollection 2014 Dec. PLoS Comput Biol. 2014. PMID: 25474468 Free PMC article.
Manual classification strategies in the ECOD database.
Cheng H, Liao Y, Schaeffer RD, Grishin NV. Cheng H, et al. Among authors: schaeffer rd. Proteins. 2015 Jul;83(7):1238-51. doi: 10.1002/prot.24818. Epub 2015 May 8. Proteins. 2015. PMID: 25917548 Free PMC article.
CASP 11 target classification.
Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV. Kinch LN, et al. Among authors: schaeffer rd. Proteins. 2016 Sep;84 Suppl 1(Suppl 1):20-33. doi: 10.1002/prot.24982. Epub 2016 Jan 27. Proteins. 2016. PMID: 26756794 Free PMC article.
A sequence family database built on ECOD structural domains.
Liao Y, Schaeffer RD, Pei J, Grishin NV. Liao Y, et al. Among authors: schaeffer rd. Bioinformatics. 2018 Sep 1;34(17):2997-3003. doi: 10.1093/bioinformatics/bty214. Bioinformatics. 2018. PMID: 29659718 Free PMC article.
35 results