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Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket.
J Am Chem Soc. 2021 Aug 4;143(30):11349-11360. doi: 10.1021/jacs.1c00556. Epub 2021 Jul 16.
J Am Chem Soc. 2021.
PMID: 34270232
Free PMC article.
ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution.
Tian C, Kasavajhala K, Belfon KAA, Raguette L, Huang H, Migues AN, Bickel J, Wang Y, Pincay J, Wu Q, Simmerling C.
Tian C, et al. Among authors: belfon kaa.
J Chem Theory Comput. 2020 Jan 14;16(1):528-552. doi: 10.1021/acs.jctc.9b00591. Epub 2019 Dec 3.
J Chem Theory Comput. 2020.
PMID: 31714766
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phosaa14SB and phosaa19SB: Updated Amber Force Field Parameters for Phosphorylated Amino Acids.
Raguette LE, Cuomo AE, Belfon KAA, Tian C, Hazoglou V, Witek G, Telehany SM, Wu Q, Simmerling C.
Raguette LE, et al. Among authors: belfon kaa.
J Chem Theory Comput. 2024 Aug 16. doi: 10.1021/acs.jctc.4c00732. Online ahead of print.
J Chem Theory Comput. 2024.
PMID: 39151116
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